Browse Element(s) Details


OsAffx.7861.1.S1_x_at

Description tigr:9640.m04136
TID=OsAffx.7861.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4211010/11hypothetical protein
LOC_Os12g421005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42050NANA12+26049259..26052356Protein kinase domain containing protein, expressed
LOC_Os12g42060Os.52032.1.S1_at11/1112+26053857..26055268wall-associated kinase 3, putative, expressed
LOC_Os12g42070Os.38179.3.S1_at11/1112+26060046..26064118Protein kinase domain containing protein, expressed
LOC_Os12g42070Os.38179.2.S1_at11/1112+26060046..26064118Protein kinase domain containing protein, expressed
LOC_Os12g42070Os.38179.3.S1_x_at11/1112+26060046..26064118Protein kinase domain containing protein, expressed
LOC_Os12g42090Os.3377.1.S1_at11/1112+26067505..2606993737 kDa inner envelope membrane protein, chloroplast precursor, putative, expressed
LOC_Os12g42100OsAffx.7861.1.S1_x_at5/1112+26071350..26075120hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_x_at10/1112+26076981..26082102hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_at9/1112+26076981..26082102hypothetical protein
LOC_Os12g42120OsAffx.20084.1.S1_at11/1112+26084259..26086439pentatricopeptide, putative
LOC_Os12g42130Os.50779.1.S1_at11/1112+26086767..26089282TRANSPARENT TESTA 12 protein, putative, expressed
LOC_Os12g42140Os.27662.1.S1_at11/1112+26090409..26093235G-patch domain containing protein, expressed
LOC_Os12g42150Os.20258.1.S1_at11/1112+26094981..26097138transducin family protein, putative, expressed
LOC_Os12g42160OsAffx.20085.1.S1_x_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42160Os.47736.1.S1_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42170NANA12+26104714..26105331hypothetical protein
LOC_Os12g42180Os.10241.1.S1_at11/1112+26105882..26108174ribosomal protein L14 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7861.1.S1_x_at--908--5632Chr12:26079142..26079165 (24 bp)
GACAGCATTGCCCAAAAGTTTCCTT
LOC_Os12g42110
OsAffx.7861.1.S1_x_at--830--1012Chr12:26079084..26079108 (25 bp)
AGGTTCGGCGAGTTGCTCAGCTTGA
LOC_Os12g42110
OsAffx.7861.1.S1_x_at--675--6471Chr12:26079032..26079056 (25 bp)
GATACCATTTGTGACCTCAGGGCTA
LOC_Os12g42110
OsAffx.7861.1.S1_x_at--1102--9291NONE
TCCCCTTCCAACTGGTTCTCATAAT
NONE
OsAffx.7861.1.S1_x_at--393--773Chr12:26077734..26077756 (23 bp)
ATGTCCATCTTTGTTGGGATCAGAC
LOC_Os12g42110
OsAffx.7861.1.S1_x_at--418--6352Chr12:26077605..26077629 (25 bp)
GATGCTGTTAAGAGGATTTGCCCCA
LOC_Os12g42110
OsAffx.7861.1.S1_x_at--37--2332Chr12:26077580..26077604 (25 bp)
AAAGGGCATTGCTCATTGGGATGAC
LOC_Os12g42110
OsAffx.7861.1.S1_x_at--1029--1331Chr12:26077197..26077540 (25 bp)
AGAGTGGTCCAGAAGATCAGGCATA
LOC_Os12g42110
OsAffx.7861.1.S1_x_at--1131--6431Chr12:26077183..26077207 (25 bp)
GATCAGGCATATTTCTTAGTTCGTA
LOC_Os12g42110
OsAffx.7861.1.S1_x_at--655--8511Chr12:26077155..26077179 (25 bp)
TGGAATCTTGTTAGCTTCTACTCCC
LOC_Os12g42110
OsAffx.7861.1.S1_x_at--1002--1991Chr12:26077136..26077160 (25 bp)
ACTCCCTCCGTAGTTATATTTGGAG
LOC_Os12g42110
Target Sequence 
GACAGCATTGCCCAAAAGTTTCCTTACTTGGTCAGAAAGAAACTAAAGGAAGGGGAGGAGGTTCGGCGAGTTGCTCAGCT
TGACTGGAGAGTAATCGAGAGTGATCTTCAGATACCATTTGTGACCTCAGGGCTAGAGTTTGTTCCCCTTCCAACTGGTT
CTCATAATGTCCATCTTTGTTGGGATCAGACACTGGATGCTGTTAAGAGGATTTGCCCCAAAAGGGCATTGCTCATTGGG
ATGACTGATGAAATGGACCATCACAAGGACAATGAAACGTTGGAAGAGTGGTCCAGAAGATCAGGCATATTTCTTAGTTC
GTATGATGGAATCTTGTTAGCTTCTACTCCCTCCGTAGTTATATTTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7861.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis