Browse Element(s) Details


Os.10241.1.S1_at

Description gb:AK059735.1
DB_XREF= gi:32969753
TID=Os.10241.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B02, full insert sequence.
FL= gb:AK104805.1 gb:AK098937.1 gb:AK059735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4218011/11ribosomal protein L14 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42110OsAffx.7861.1.S1_x_at10/1112+26076981..26082102hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_at9/1112+26076981..26082102hypothetical protein
LOC_Os12g42120OsAffx.20084.1.S1_at11/1112+26084259..26086439pentatricopeptide, putative
LOC_Os12g42130Os.50779.1.S1_at11/1112+26086767..26089282TRANSPARENT TESTA 12 protein, putative, expressed
LOC_Os12g42140Os.27662.1.S1_at11/1112+26090409..26093235G-patch domain containing protein, expressed
LOC_Os12g42150Os.20258.1.S1_at11/1112+26094981..26097138transducin family protein, putative, expressed
LOC_Os12g42160OsAffx.20085.1.S1_x_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42160Os.47736.1.S1_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42170NANA12+26104714..26105331hypothetical protein
LOC_Os12g42180Os.10241.1.S1_at11/1112+26105882..26108174ribosomal protein L14 containing protein, expressed
LOC_Os12g42190Os.19899.1.S1_x_at11/1112+26121447..26125141transposon protein, putative, unclassified, expressed
LOC_Os12g42190Os.19899.2.S1_at11/1112+26121447..26125141transposon protein, putative, unclassified, expressed
LOC_Os12g42190OsAffx.31549.2.S1_x_at1/1112+26121447..26125141transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10241.1.S1_at--1101--7071Chr12:26106407..26106431 (25 bp)
GTCAAGGAAGCACAGCCTCGTGGTA
LOC_Os12g42180
Os.10241.1.S1_at--336--6132Chr12:26106355..26106379 (25 bp)
GAGTGGTTGTCCGTGCTGCTATGAA
LOC_Os12g42180
Os.10241.1.S1_at--331--2211Chr12:26106292..26106316 (25 bp)
ACAACGCGATTGTCCTTGTGAACAA
LOC_Os12g42180
Os.10241.1.S1_at--489--8251Chr12:26106251..26106275 (25 bp)
GGCACTCGTGTATTTGGTCCTGTTC
LOC_Os12g42180
Os.10241.1.S1_at--846--4971Chr12:26106204..26106228 (25 bp)
GCATCTCAAGATCCTAGCGTTAGCG
LOC_Os12g42180
Os.10241.1.S1_at--583--6031Chr12:26106166..26106190 (25 bp)
GAGATGCTTACATACCTGGCAACCT
LOC_Os12g42180
Os.10241.1.S1_at--259--8491Chr12:26106150..26106174 (25 bp)
TGGCAACCTACCTGTTAGTTCTGCA
LOC_Os12g42180
Os.10241.1.S1_at--1111--6071Chr12:26106097..26106121 (25 bp)
GAGTATTCCACCGTTGTTTTGATCA
LOC_Os12g42180
Os.10241.1.S1_at--646--2291Chr12:26106039..26106063 (25 bp)
AAATGAGCTGATGCCCTGCAGTCAG
LOC_Os12g42180
Os.10241.1.S1_at--85--9812Chr12:26105983..26106007 (25 bp)
TAACCTCTGTAGTATTGCATTCCAT
LOC_Os12g42180
Os.10241.1.S1_at--896--5151Chr12:26105908..26105932 (25 bp)
GCAACTGAACTCTTGTGCTTTCTGA
LOC_Os12g42180
Target Sequence 
GTCAAGGAAGCACAGCCTCGTGGTAAGGTGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCG
AGGACGCAACGATGGCAGCGAGATCCAGTTTGATGACAACGCGATTGTCCTTGTGAACAACAAAGGCGAGCTGATTGGCA
CTCGTGTATTTGGTCCTGTTCCCCACGAACTCAGGAAAAAGAAGCATCTCAAGATCCTAGCGTTAGCGGAACACATAGTT
TGAGATGCTTACATACCTGGCAACCTACCTGTTAGTTCTGCAGAATGAAATGAGCATGGTGCTGTCTCAAGAGTATTCCA
CCGTTGTTTTGATCAGTTCTGTTTGCAATAATGTACCCTCAAAAGATTAAATGAGCTGATGCCCTGCAGTCAGTCCTAGA
CAAATCAGATTCTGTACTACTATTTAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTC
TCTTGTTAAACCTGAAACTGCAACTGAACTCTTGTGCTTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis