Browse Element(s) Details


Os.33792.1.S1_at

Description gb:AK074024.1
DB_XREF= gi:32984047
TID=Os.33792.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33792 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0041L14.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033077I15, full insert sequence.
FL= gb:AK074024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1229011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12232NANA10+6574669..6577596retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12240NANA10+6581229..6584682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12260NANA10+6588772..6590235retrotransposon protein, putative, unclassified
LOC_Os10g12270OsAffx.22722.1.S1_at2/1110+6593748..6596846retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12270OsAffx.22722.1.S1_x_at1/1110+6593748..6596846retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12280OsAffx.21897.5.S1_x_at2/1110+6597162..6600087retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12290Os.33792.1.S1_at11/1110+6601968..6606451expressed protein
LOC_Os10g12300Os.6046.1.S1_at7/1110+6611152..6611606hypothetical protein
LOC_Os10g12320OsAffx.24713.1.S1_x_at11/1110+6622461..6622799hypothetical protein
LOC_Os10g12330OsAffx.11115.1.S1_at11/1110+6625660..6629978helicase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33792.1.S1_at--288--4031Chr10:6603233..6603257 (25 bp)
CGTTATCAGGGACTGTGCCTACAGT
LOC_Os10g12290
Os.33792.1.S1_at--43--131Chr10:6603197..6603221 (25 bp)
ATTAAGGGCCGATCTAACCTCTGTT
LOC_Os10g12290
Os.33792.1.S1_at--941--8791Chr10:6603073..6603200 (25 bp)
TGTTCCATTTCCTGCAGACTATTGC
LOC_Os10g12290
Os.33792.1.S1_at--1086--2031Chr10:6603056..6603079 (24 bp)
ACTATTGCGGGTGCATACCGGAGCT
LOC_Os10g12290
Os.33792.1.S1_at--607--7851Chr10:6603025..6603049 (25 bp)
GGTATGGCTCAAAACCTGGTGGAAT
LOC_Os10g12290
Os.33792.1.S1_at--1010--7951Chr10:6602966..6602990 (25 bp)
GGATCAGCTCTGTGGGCAATGCCTC
LOC_Os10g12290
Os.33792.1.S1_at--660--591Chr10:6602948..6602972 (25 bp)
ATGCCTCCGGTCCTTTTGTGGTGTT
LOC_Os10g12290
Os.33792.1.S1_at--81--4351Chr10:6602891..6602915 (25 bp)
CCAGGGTAATCATGCTGCAGGACCT
LOC_Os10g12290
Os.33792.1.S1_at--656--2151Chr10:6602816..6602840 (25 bp)
ACAGCTCCCAGTGGAATTTGGCCAA
LOC_Os10g12290
Os.33792.1.S1_at--536--1911Chr10:6602695..6602719 (25 bp)
ACGGGCGTCACATGCTTCCTATTAA
LOC_Os10g12290
Os.33792.1.S1_at--242--6611Chr10:6602621..6602645 (25 bp)
GATTGGAATCTTTGTGCTCGTGCAG
LOC_Os10g12290
Target Sequence 
CGTTATCAGGGACTGTGCCTACAGTGTGGCCGCCGCATTAAGGGCCGATCTAACCTCTGTTCCATTTCCTGCAGACTATT
GCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGGTGGAATTTTCAGAGTCTGTTGGACAGCNGATCCATC
AGCTGGATCAGCTCTGTGGGCAATGCCTCCGGTCCTTTTGTGGTGTTTCCTGTCCGAACCNTNTGGTCCACCCACNACCC
CCAGGGTAATCATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATGGCTGGTTGGTCATAGACCAAGAACAGC
TCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAGAGGACGGGCGTCACATGCTTCCTATTAAGCGCCTCCCC
GCTGAGCATGGAGATGGGCATGATGGATTAGTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis