Browse Element(s) Details


Os.3390.1.S1_at

Description gb:Y11415.1
DB_XREF= gi:1946266
GEN=myb
TID=Os.3390.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.3390 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for myb factor, 1355 bp
DEF=O.sativa mRNA for myb factor, 1355 bp.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g372107/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37180Os.19619.1.S1_at11/117+22266055..22271922ABC1 family protein, putative, expressed
LOC_Os07g37190NANA7+22279482..22282709transposon protein, putative, unclassified
LOC_Os07g37200NANA7+22283352..22289507transposon protein, putative, unclassified
LOC_Os07g37210Os.3390.1.S1_at7/117+22292042..22293615Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g37210Os.57514.1.S1_x_at1/117+22292042..22293615Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g37220Os.51989.1.S1_at11/117+22302166..22306982PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37220Os.51989.1.S2_at11/117+22302166..22306982PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37230Os.27580.1.S1_at10/117+22307726..22311869PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37240Os.12624.1.S1_s_at11/117+22314578..22316241expressed protein
LOC_Os07g37250Os.13481.1.S1_s_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.37267.1.S1_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.13481.1.S1_at10/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3390.1.S1_at--485--4131NONE
CGCGGCGACCGAACAGTTTTTGCAG
NONE
Os.3390.1.S1_at--585--5491NONE
GAACAGTTTTTGCAGGCCACCAGCA
NONE
Os.3390.1.S1_at--217--5811Chr07:22292360..22292384 (25 bp)
GACGCGTCCAACCTGCAGCAGTGGA
LOC_Os07g37210
Os.3390.1.S1_at--1151--5931NONE
GAGCAGCACGGTTTCGAGTAGCAAC
NONE
Os.3390.1.S1_at--864--5071Chr07:22292267..22292291 (25 bp)
GCAGCCGCCGGACAGATCAACTCAT
LOC_Os07g37210
Os.3390.1.S1_at--984--371NONE
ATCAACTCATCCTTTACGACGACGA
NONE
Os.3390.1.S1_at--45--1871Chr07:22292225..22292249 (25 bp)
ACGACGTATGGCTTGAACGCGAGCG
LOC_Os07g37210
Os.3390.1.S1_at--976--9591Chr07:22292176..22292200 (25 bp)
TCATCAACATGCACCTATCCGAGCT
LOC_Os07g37210
Os.3390.1.S1_at--1111--4071Chr07:22292148..22292172 (25 bp)
CGACGTGAGCGACTACATGTAATAA
LOC_Os07g37210
Os.3390.1.S1_at--435--9231Chr07:22292117..22292141 (25 bp)
TCCTTGCGTGGAAACAGAGCCGAAT
LOC_Os07g37210
Os.3390.1.S1_at--747--2171Chr07:22292089..22292113 (25 bp)
ACACTCCACGCCATGTACCAAAGGG
LOC_Os07g37210
Target Sequence 
CGCGGCGACCGAACAGTTTTTGCAGGCCACCAGCACCGCCTGCCACCAAATGCCAGGCCTGGTTCACGCCAGCCCGACGC
AGCAGCTGGCGCAGCAACCGCAGGATCACATGGCGGCGGCGACCTGCCACCGCCGCGGCGCCGTGCAGCACCCGAGCTAC
GACAACCAGCTCGACTACGTGCCGGCGCTGATGCAGATGGCGTCCGACGCGTCCAACCTGCAGCAGTGGAGCAGCACGGT
TTCGAGTAGCAACAACCACAACGTCAACTCCGGCGTGTCCACGCCGTTGTCGAGCCCAGCAGCCGCCGGACAGATCAACT
CATCCTTTACGACGACGACGACGACGTATGGCTTGAACGCGAGCGGTGACGTCGACGACGCTGGGCTGCTCATCAACATG
CACCTATCCGAGCTCCTCGACGTGAGCGACTACATGTAATAAGATTTTTCCTTGCGTGGAAACAGAGCCGAATCGAACAC
TCCACGCCATGTACCAAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis