Browse Element(s) Details


Os.27580.1.S1_at

Description gb:AK120618.1
DB_XREF= gi:37990241
TID=Os.27580.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152B16, full insert sequence.
FL= gb:AK120618.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3723010/11PAP-specific phosphatase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37200NANA7+22283352..22289507transposon protein, putative, unclassified
LOC_Os07g37210Os.3390.1.S1_at7/117+22292042..22293615Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g37210Os.57514.1.S1_x_at1/117+22292042..22293615Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g37220Os.51989.1.S1_at11/117+22302166..22306982PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37220Os.51989.1.S2_at11/117+22302166..22306982PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37230Os.27580.1.S1_at10/117+22307726..22311869PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37240Os.12624.1.S1_s_at11/117+22314578..22316241expressed protein
LOC_Os07g37250Os.13481.1.S1_s_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.37267.1.S1_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.13481.1.S1_at10/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37260OsAffx.28794.1.S1_at11/117+22329649..22331170hypothetical protein
LOC_Os07g37270Os.46448.1.S1_at11/117+22332247..22336738Membrane associated protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006790biological_processsulfur metabolism
GO:0009409biological_processresponse to cold
GO:0009628biological_processresponse to abiotic stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009968biological_processnegative regulation of signal transduction
GO:0016481biological_processnegative regulation of transcription
GO:0048015biological_processphosphoinositide-mediated signaling
GO:0004437molecular_functioninositol or phosphatidylinositol phosphatase activity
GO:0008441molecular_function3'(2'),5'-bisphosphate nucleotidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27580.1.S1_at--1148--4871Chr07:22308817..22308841 (25 bp)
GCTATTGCCTTTCCGATAACCAAAC
LOC_Os07g37230
Os.27580.1.S1_at--854--6471Chr07:22308783..22308807 (25 bp)
GATACCACTATCTGTTGTGTTCAAC
LOC_Os07g37230
Os.27580.1.S1_at--955--3651NONE
CTTCATATGTTTTCTCTGGCAGTTT
NONE
Os.27580.1.S1_at--234--2811Chr07:22308346..22308370 (25 bp)
AAGTACCTTACTGTAGCCTATGGGA
LOC_Os07g37230
Os.27580.1.S1_at--997--1371Chr07:22308322..22308346 (25 bp)
AGAGCCTCAGTTTTCGTCCTTAAAG
LOC_Os07g37230
Os.27580.1.S1_at--935--5411Chr07:22308016..22308040 (25 bp)
GAACCTTTGGATCTTGAAGCTGACC
LOC_Os07g37230
Os.27580.1.S1_at--344--5991Chr07:22307979..22308003 (25 bp)
GAGACATTTACCCTCATGGTGGCAT
LOC_Os07g37230
Os.27580.1.S1_at--27--7251Chr07:22307938..22307962 (25 bp)
GTCCTGCACAACAAGCTTGCTGAAT
LOC_Os07g37230
Os.27580.1.S1_at--308--10191Chr07:22307874..22307898 (25 bp)
TATAGCTCCACACATGACACATTTT
LOC_Os07g37230
Os.27580.1.S1_at--502--2691Chr07:22307817..22307841 (25 bp)
AAGCTGTATTTGGTCTCTCATCCAG
LOC_Os07g37230
Os.27580.1.S1_at--63--2511Chr07:22307777..22307801 (25 bp)
AACATGTCCATATCACTTATCACCT
LOC_Os07g37230
Target Sequence 
GCTATTGCCTTTCCGATAACCAAACCTGGAATATGATACCACTATCTGTTGTGTTCAACTCAACGACGGATGAATCGAAA
CCTAGAGATGAGAATGAACTTCTTACTTCATATGTTTTCTCTGGCAGTTTGTGCAAGTACCTTACTGTAGCCTATGGGAG
AGCCTCAGTTTTCGTCCTTAAAGCACGGACGAAAAGCCTCAAGTCTTGGGATCATACTGTAGGAGTAATTTGTGTGCAGG
AAGCTGGAGGCCAAGTTACTGACTGGAGAGGGGAACCTTTGGATCTTGAAGCTGACCTAACTGGGCGCAGAGACATTTAC
CCTCATGGTGGCATTCTCATCACCAACGGCGTCCTGCACAACAAGCTTGCTGAATTGATCAAGGCGAATTACTAAGTAGC
TGCAATGTTGCATATATAGCTCCACACATGACACATTTTTTTTGGGGTAGCATTTTACCTCACCGACCATCAAGCTGTAT
TTGGTCTCTCATCCAGGAGAGAAACCTTGCAAACATGTCCATATCACTTATCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis