Browse Element(s) Details


OsAffx.28794.1.S1_at

Description tigr:9635.m03692
TID=OsAffx.28794.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3726011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37220Os.51989.1.S1_at11/117+22302166..22306982PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37220Os.51989.1.S2_at11/117+22302166..22306982PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37230Os.27580.1.S1_at10/117+22307726..22311869PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37240Os.12624.1.S1_s_at11/117+22314578..22316241expressed protein
LOC_Os07g37250Os.13481.1.S1_s_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.37267.1.S1_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.13481.1.S1_at10/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37260OsAffx.28794.1.S1_at11/117+22329649..22331170hypothetical protein
LOC_Os07g37270Os.46448.1.S1_at11/117+22332247..22336738Membrane associated protein, putative, expressed
LOC_Os07g37280Os.11147.1.S1_at11/117+22338281..22339707expressed protein
LOC_Os07g37280OsAffx.28795.1.S1_at10/117+22338281..22339707expressed protein
LOC_Os07g37290NANA7+22341758..22341979hypothetical protein
LOC_Os07g37300OsAffx.16593.1.S1_at11/117+22343802..22344275hypothetical protein
LOC_Os07g37310Os.23100.1.S1_at10/117+22344763..22346569expressed protein
LOC_Os07g37320Os.26932.1.S1_at11/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37320OsAffx.7485.1.S1_x_at1/117+22351405..22354105Glucose transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28794.1.S1_at--929--6091Chr07:22330857..22330881 (25 bp)
GTTCCGGGTGGACATCGGCATAACC
LOC_Os07g37260
OsAffx.28794.1.S1_at--370--3011Chr07:22330830..22330854 (25 bp)
AATCCCGAAACATCTAGGCCTCGCT
LOC_Os07g37260
OsAffx.28794.1.S1_at--725--871Chr07:22330815..22330839 (25 bp)
AGGCCTCGCTTTGCAACGGGCTAGA
LOC_Os07g37260
OsAffx.28794.1.S1_at--1029--7571Chr07:22330798..22330822 (25 bp)
GGGCTAGACAAACTATTGGCCATTT
LOC_Os07g37260
OsAffx.28794.1.S1_at--1057--8451Chr07:22330782..22330806 (25 bp)
TGGCCATTTTATGGGTCCATGCAAC
LOC_Os07g37260
OsAffx.28794.1.S1_at--572--351Chr07:22329900..22329924 (25 bp)
ATAACTGCCATCATCACTATCTTGC
LOC_Os07g37260
OsAffx.28794.1.S1_at--991--1671Chr07:22329872..22329896 (25 bp)
AGCCGGCCGGTGATATCTGCACCGA
LOC_Os07g37260
OsAffx.28794.1.S1_at--129--2391Chr07:22329815..22329839 (25 bp)
AAACTGAAGCCTCAGCTTTGCTGCT
LOC_Os07g37260
OsAffx.28794.1.S1_at--760--10611Chr07:22329778..22329802 (25 bp)
TTCCGGCATCGGAGGATTTCCAACG
LOC_Os07g37260
OsAffx.28794.1.S1_at--1022--8011Chr07:22329737..22329761 (25 bp)
GGAGGAGACCATCCAACGGCAATGA
LOC_Os07g37260
OsAffx.28794.1.S1_at--428--3951Chr07:22329721..22329745 (25 bp)
CGGCAATGAGATGGTCGTCGGCCAT
LOC_Os07g37260
Target Sequence 
GTTCCGGGTGGACATCGGCATAACCCCAATCCCGAAACATCTAGGCCTCGCTTTGCAACGGGCTAGACAAACTATTGGCC
ATTTTATGGGTCCATGCAACCATGAGATAACTGCCATCATCACTATCTTGCTGCAGCCGGCCGGTGATATCTGCACCGAA
GTGAAGAACACAGTGAACGGTGGTGGAAGCCAAACTGAAGCCTCAGCTTTGCTGCTCACCTCGCTGGTTTCCGGCATCGG
AGGATTTCCAACGCCGGCGTACGTCCGTGGGAGGAGACCATCCAACGGCAATGAGATGGTCGTCGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis