Browse Element(s) Details


Os.11147.1.S1_at

Description gb:AK063204.1
DB_XREF= gi:32973222
TID=Os.11147.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-C11, full insert sequence.
FL= gb:AK063204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3728011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37240Os.12624.1.S1_s_at11/117+22314578..22316241expressed protein
LOC_Os07g37250Os.13481.1.S1_s_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.37267.1.S1_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.13481.1.S1_at10/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37260OsAffx.28794.1.S1_at11/117+22329649..22331170hypothetical protein
LOC_Os07g37270Os.46448.1.S1_at11/117+22332247..22336738Membrane associated protein, putative, expressed
LOC_Os07g37280Os.11147.1.S1_at11/117+22338281..22339707expressed protein
LOC_Os07g37280OsAffx.28795.1.S1_at10/117+22338281..22339707expressed protein
LOC_Os07g37290NANA7+22341758..22341979hypothetical protein
LOC_Os07g37300OsAffx.16593.1.S1_at11/117+22343802..22344275hypothetical protein
LOC_Os07g37310Os.23100.1.S1_at10/117+22344763..22346569expressed protein
LOC_Os07g37320Os.26932.1.S1_at11/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37320OsAffx.7485.1.S1_x_at1/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37330NANA7+22360837..22361230hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11147.1.S1_at--167--2631Chr07:22338630..22338654 (25 bp)
AACCGTGTCAGACATTTGCATGGTC
LOC_Os07g37280
Os.11147.1.S1_at--459--551Chr07:22338694..22338718 (25 bp)
ATCCGGTTCGAGTTCTTGGCCATAA
LOC_Os07g37280
Os.11147.1.S1_at--193--1231Chr07:22338704..22338728 (25 bp)
AGTTCTTGGCCATAACATGCGTGCT
LOC_Os07g37280
Os.11147.1.S1_at--868--2091Chr07:22338718..22338742 (25 bp)
ACATGCGTGCTCGTGGAAAGCTCAA
LOC_Os07g37280
Os.11147.1.S1_at--1149--2511Chr07:22338833..22338857 (25 bp)
AACTTCCAAGTGCATTCTGAGAGGG
LOC_Os07g37280
Os.11147.1.S1_at--981--8331Chr07:22338856..22338880 (25 bp)
GGCTGTGAACTTCTCTGGTTTGTGC
LOC_Os07g37280
Os.11147.1.S1_at--310--6871Chr07:22338873..22338897 (25 bp)
GTTTGTGCTTCCTTTTGACTTGAAC
LOC_Os07g37280
Os.11147.1.S1_at--156--1231Chr07:22338915..22338939 (25 bp)
AGTTGCCTTGCTTGGACTCTGAAGC
LOC_Os07g37280
Os.11147.1.S1_at--668--8991Chr07:22338934..22338958 (25 bp)
TGAAGCTTTGCTTTGGCGTCTAAAT
LOC_Os07g37280
Os.11147.1.S1_at--727--3031Chr07:22339055..22339079 (25 bp)
AATCCAATCCAAGCGTGAGCTCACG
LOC_Os07g37280
Os.11147.1.S1_at--196--7391Chr07:22339069..22339093 (25 bp)
GTGAGCTCACGCGTGCACTTTGAGT
LOC_Os07g37280
Target Sequence 
AACCGTGTCAGACATTTGCATGGTCTGATCAAAAGCATCATCATCATCGAGCAGAGCTGACTCGATCCGGTTCGAGTTCT
TGGCCATAACATGCGTGCTCGTGGAAAGCTCAAGAGATCAAGCTTCAGAGATCGATGGAACATGGCAGAAAAATCTATGT
ACATTAGCTAAGAACGCATGTACATATATGTATAGCTAGTTTCAACTTCCAAGTGCATTCTGAGAGGGCTGTGAACTTCT
CTGGTTTGTGCTTCCTTTTGACTTGAACAAAAAGATCATGCAAGCAGTTGCCTTGCTTGGACTCTGAAGCTTTGCTTTGG
CGTCTAAATTAAATCAAGANCCTACCTGAATGGACAGTGCTGAACAGATAGATAAGTAGTAGTACTTAGCATTTAGCATT
GAACTAGTTCTTGTCAACGATAAGTAATCCAATCCAAGCGTGAGCTCACGCGTGCACTTTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis