Browse Element(s) Details


Os.23100.1.S1_at

Description gb:BU673850
DB_XREF= gi:23514918
DB_XREF=NL_22_56
CLONE=NL_22_56
TID=Os.23100.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.23100 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194465.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3731010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37250Os.13481.1.S1_s_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.37267.1.S1_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.13481.1.S1_at10/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37260OsAffx.28794.1.S1_at11/117+22329649..22331170hypothetical protein
LOC_Os07g37270Os.46448.1.S1_at11/117+22332247..22336738Membrane associated protein, putative, expressed
LOC_Os07g37280Os.11147.1.S1_at11/117+22338281..22339707expressed protein
LOC_Os07g37280OsAffx.28795.1.S1_at10/117+22338281..22339707expressed protein
LOC_Os07g37290NANA7+22341758..22341979hypothetical protein
LOC_Os07g37300OsAffx.16593.1.S1_at11/117+22343802..22344275hypothetical protein
LOC_Os07g37310Os.23100.1.S1_at10/117+22344763..22346569expressed protein
LOC_Os07g37320Os.26932.1.S1_at11/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37320OsAffx.7485.1.S1_x_at1/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37330NANA7+22360837..22361230hypothetical protein
LOC_Os07g37340NANA7+22365611..22365910hypothetical protein
LOC_Os07g37350Os.5797.1.S1_at11/117+22368586..22370786Armadillo/beta-catenin-like repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23100.1.S1_at--785--5311NONE
GAAGGTGACGTTCCAGCGGCCGAAC
NONE
Os.23100.1.S1_at--847--9711Chr07:22345155..22345179 (25 bp)
TCAACGACCACGTGGTGCGGCGGCT
LOC_Os07g37310
Os.23100.1.S1_at--127--5371Chr07:22345094..22345118 (25 bp)
GAAGAAGTCCGTGTCCGGGTCCGTG
LOC_Os07g37310
Os.23100.1.S1_at--102--9031Chr07:22345071..22345095 (25 bp)
TGCAGTTCCCGCTCTGGGACGGCTT
LOC_Os07g37310
Os.23100.1.S1_at--304--5831Chr07:22344973..22344997 (25 bp)
GACCTGCCCGACAACGTGTGACTAC
LOC_Os07g37310
Os.23100.1.S1_at--1019--2571Chr07:22344961..22344985 (25 bp)
AACGTGTGACTACTCGCGGTCGGTC
LOC_Os07g37310
Os.23100.1.S1_at--688--3631Chr07:22344928..22344952 (25 bp)
CTTGCGCCTGCGTGTGTAGACGTGT
LOC_Os07g37310
Os.23100.1.S1_at--242--5751Chr07:22344910..22344934 (25 bp)
GACGTGTGCCGTGTAATGTACTACT
LOC_Os07g37310
Os.23100.1.S1_at--554--91Chr07:22344878..22344902 (25 bp)
ATTCTTTGTAGAGTACACGTTTGAT
LOC_Os07g37310
Os.23100.1.S1_at--280--3331Chr07:22344863..22344887 (25 bp)
CACGTTTGATTATTGATCGACGCGT
LOC_Os07g37310
Os.23100.1.S1_at--535--6391Chr07:22344849..22344873 (25 bp)
GATCGACGCGTTTGTATTGTTGTTG
LOC_Os07g37310
Target Sequence 
GAAGGTGACGTTCCAGCGGCCGAACCCGAGCACGCTGCAGGCGTCGTTCACGGGGACGCTGCGGAGCCGGATGGAGGGCG
GCGGGAGCNGTGCTGGTGGCGCTGTACGAGAGCGGGCTGGTCACGGACTGCGGGCGCGGCGAGAACAAGGGGAAGTCGCT
GCTCAACGACCACGTGGTGCGGCGGCTGGAGAAGGTGGCCGCCGTGCGCGACGGCGCGTCGGCGAAGAAGTCCGTGTCCG
GGTCCGTGCAGTTCCCGCTCTGGGACGGCTTCCGCGCCTCCCGCTGCGGCCTCGTCCTCTTCGTCCAGAACGCCGCGCTG
CAGGTGCTCGGCGTCCAGCACTTCGACCTGCCCGACAACGTGTGACTACTCGCGGTCGGTCGGTCGAGGCTTGCGCCTGC
GTGTGTAGACGTGTGCCGTGTAATGTACTACTAGTAAATATTCTTTGTAGAGTACACGTTTGATTATTGATCGACGCGTT
TGTATTGTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis