Browse Element(s) Details


OsAffx.28795.1.S1_at

Description tigr:9635.m03694
TID=OsAffx.28795.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3728010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37240Os.12624.1.S1_s_at11/117+22314578..22316241expressed protein
LOC_Os07g37250Os.13481.1.S1_s_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.37267.1.S1_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.13481.1.S1_at10/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37260OsAffx.28794.1.S1_at11/117+22329649..22331170hypothetical protein
LOC_Os07g37270Os.46448.1.S1_at11/117+22332247..22336738Membrane associated protein, putative, expressed
LOC_Os07g37280Os.11147.1.S1_at11/117+22338281..22339707expressed protein
LOC_Os07g37280OsAffx.28795.1.S1_at10/117+22338281..22339707expressed protein
LOC_Os07g37290NANA7+22341758..22341979hypothetical protein
LOC_Os07g37300OsAffx.16593.1.S1_at11/117+22343802..22344275hypothetical protein
LOC_Os07g37310Os.23100.1.S1_at10/117+22344763..22346569expressed protein
LOC_Os07g37320Os.26932.1.S1_at11/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37320OsAffx.7485.1.S1_x_at1/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37330NANA7+22360837..22361230hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28795.1.S1_at--442--2011Chr07:22338311..22338335 (25 bp)
ACTCTCTGAGCTCTCAAGCTACAAG
LOC_Os07g37280
OsAffx.28795.1.S1_at--124--9891Chr07:22338344..22338368 (25 bp)
TACATAGTAGCTTCTTCAGTGATCG
LOC_Os07g37280
OsAffx.28795.1.S1_at--463--4531Chr07:22338444..22338468 (25 bp)
GCCGCCATTGAGCTCAAGGAGCAAG
LOC_Os07g37280
OsAffx.28795.1.S1_at--630--5951Chr07:22338462..22338486 (25 bp)
GAGCAAGTGGCAAAGCCGTGCTCGT
LOC_Os07g37280
OsAffx.28795.1.S1_at--755--8031NONE
GGAGTCGCTTAGGATGGTCATGAAC
NONE
OsAffx.28795.1.S1_at--408--5471Chr07:22339422..22339446 (25 bp)
GAACATGCATGCTAAGCCATGGGTA
LOC_Os07g37280
OsAffx.28795.1.S1_at--700--7691Chr07:22339450..22339474 (25 bp)
GGGTCTTACAGGAACAATAGTCCAT
LOC_Os07g37280
OsAffx.28795.1.S1_at--28--6891Chr07:22339548..22339572 (25 bp)
GTATAAGTTGGTTTTCAGGTGGACA
LOC_Os07g37280
OsAffx.28795.1.S1_at--76--8291Chr07:22339596..22339620 (25 bp)
GGCTTTTACAAGGACATACGTTTAT
LOC_Os07g37280
OsAffx.28795.1.S1_at--505--10031Chr07:22339625..22339649 (25 bp)
TAGAGTACCTACTTATACACTTTAG
LOC_Os07g37280
OsAffx.28795.1.S1_at--1089--9852Chr07:22339640..22339664 (25 bp)
TACACTTTAGGTGCTTAGGGCAGAA
LOC_Os07g37280
Target Sequence 
ACTCTCTGAGCTCTCAAGCTACAAGTTCTTAATTACATAGTAGCTTCTTCAGTGATCGTGAGGTTAACAACAAGAACAAG
AAACGATGAGGTTTGTATTGGTGAACAAGGCGTACATGGCGGTGACGCTGGGCGCCGCCATTGAGCTCAAGGAGCAAGTG
GCAAAGCCGTGCTCGTCGGCGGCGAAGCGGGGCGCCTCGGTGCTCGCCGTCCGGCCCTCCTCGTCGGCGGCGACGGCGGC
CGCGGCCGCCGCCGAGGAGTCGCTTAGGATGGTCATGAACATGCATGCTAAGCCATGGGTAAATGGGTCTTACAGGAACA
ATAGTCCATTAGCAAAGAATGATGTGGCCAACAGTGGGCCACCAAAGAAAAAAGAAGAGAGTTATAGGTACTTATCAGGA
TGGTATAAGTTGGTTTTCAGGTGGACAAGAGAGGGAGATCAGGACAGAAAGGCTTTTACAAGGACATACGTTTATTCTAT
AGAGTACCTACTTATACACTTTAGGTGCTTAGGGCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis