Browse Element(s) Details


Os.46448.1.S1_at

Description gb:AK100986.1
DB_XREF= gi:32986195
TID=Os.46448.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023145E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023145E05, full insert sequence.
FL= gb:AK100986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3727011/11Membrane associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37230Os.27580.1.S1_at10/117+22307726..22311869PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37240Os.12624.1.S1_s_at11/117+22314578..22316241expressed protein
LOC_Os07g37250Os.13481.1.S1_s_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.37267.1.S1_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.13481.1.S1_at10/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37260OsAffx.28794.1.S1_at11/117+22329649..22331170hypothetical protein
LOC_Os07g37270Os.46448.1.S1_at11/117+22332247..22336738Membrane associated protein, putative, expressed
LOC_Os07g37280Os.11147.1.S1_at11/117+22338281..22339707expressed protein
LOC_Os07g37280OsAffx.28795.1.S1_at10/117+22338281..22339707expressed protein
LOC_Os07g37290NANA7+22341758..22341979hypothetical protein
LOC_Os07g37300OsAffx.16593.1.S1_at11/117+22343802..22344275hypothetical protein
LOC_Os07g37310Os.23100.1.S1_at10/117+22344763..22346569expressed protein
LOC_Os07g37320Os.26932.1.S1_at11/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37320OsAffx.7485.1.S1_x_at1/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37330NANA7+22360837..22361230hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006970biological_processresponse to osmotic stress
GO:0005886cellular_componentplasma membrane
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46448.1.S1_at--715--2351Chr07:22336068..22336092 (25 bp)
AAACCTCCTGAAGAGAATGGCCCAA
LOC_Os07g37270
Os.46448.1.S1_at--358--8391Chr07:22336101..22336125 (25 bp)
GGCGAAGGGCTTGTCATCGATGAAT
LOC_Os07g37270
Os.46448.1.S1_at--1137--2231Chr07:22336275..22336299 (25 bp)
AAATTGTGCCTTTCTTCTGCTTCTA
LOC_Os07g37270
Os.46448.1.S1_at--191--4911Chr07:22336293..22336317 (25 bp)
GCTTCTACCGAAGCTATGCCTATAA
LOC_Os07g37270
Os.46448.1.S1_at--32--5591Chr07:22336328..22336352 (25 bp)
GAAATGTGCTGTGGCATTCTTGTAA
LOC_Os07g37270
Os.46448.1.S1_at--444--8671Chr07:22336384..22336408 (25 bp)
TGTGGTAGTCTAGTGTGTGCTTGCA
LOC_Os07g37270
Os.46448.1.S1_at--798--7451Chr07:22336398..22336422 (25 bp)
GTGTGCTTGCAGAATCAGTCGCCAA
LOC_Os07g37270
Os.46448.1.S1_at--118--2551Chr07:22336433..22336457 (25 bp)
AACTCCCGTATTTTCAGTGCTTGAT
LOC_Os07g37270
Os.46448.1.S1_at--97--351Chr07:22336521..22336545 (25 bp)
ATAAAGTTCACAAGCACACCTTCCT
LOC_Os07g37270
Os.46448.1.S1_at--28--8211Chr07:22336558..22336582 (25 bp)
GGAAGGCACATTCTATCATCAGCTT
LOC_Os07g37270
Os.46448.1.S1_at--70--7431Chr07:22336615..22336639 (25 bp)
GTGTTCATTTTATAGTGCCTTTCCA
LOC_Os07g37270
Target Sequence 
AAACCTCCTGAAGAGAATGGCCCAAAGATTGTTGGCGAAGGGCTTGTCATCGATGAATGGAAAGAACGAAGGGAAAGATA
TCTTGCACAACAACAGGTTGAAGTGGTTGACTCAGTGTAAATTGTGCCTTTCTTCTGCTTCTACCGAAGCTATGCCTATA
ATATGGCTTCAGAAATGTGCTGTGGCATTCTTGTAAACTGCTAGATTTTGTGGTTGGTAGTCTAGTGTGTGGTAGTCTAG
TGTGTGCTTGCAGAATCAGTCGCCAAAGAACAATCTAACTCCCGTATTTTCAGTGCTTGATGTGTAACTAATAGCACATA
TGTTCTATTTTTTGTGNTAGTGCTAAAATCTGCTTGTCAAAACAATAAAGTTCACAAGCACACCTTCCTCTGTATTGTTG
GGGAAGGCACATTCTATCATCAGCTTNTACCTGNTTTTGTATTGGTTTGTCAGTGATCTGTGTTCATTTTATAGTGCCTT
TCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis