Browse Element(s) Details


Os.13481.1.S1_at

Description gb:AK064914.1
DB_XREF= gi:32974932
TID=Os.13481.1
CNT=41
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.13481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23045 inositol phosphatase-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000M13, full insert sequence.
FL= gb:AK064914.1 gb:AY224446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3725010/11chloroplast inositol phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37210Os.3390.1.S1_at7/117+22292042..22293615Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g37210Os.57514.1.S1_x_at1/117+22292042..22293615Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g37220Os.51989.1.S1_at11/117+22302166..22306982PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37220Os.51989.1.S2_at11/117+22302166..22306982PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37230Os.27580.1.S1_at10/117+22307726..22311869PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37240Os.12624.1.S1_s_at11/117+22314578..22316241expressed protein
LOC_Os07g37250Os.13481.1.S1_s_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.37267.1.S1_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.13481.1.S1_at10/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37260OsAffx.28794.1.S1_at11/117+22329649..22331170hypothetical protein
LOC_Os07g37270Os.46448.1.S1_at11/117+22332247..22336738Membrane associated protein, putative, expressed
LOC_Os07g37280Os.11147.1.S1_at11/117+22338281..22339707expressed protein
LOC_Os07g37280OsAffx.28795.1.S1_at10/117+22338281..22339707expressed protein
LOC_Os07g37290NANA7+22341758..22341979hypothetical protein
LOC_Os07g37300OsAffx.16593.1.S1_at11/117+22343802..22344275hypothetical protein
LOC_Os07g37310Os.23100.1.S1_at10/117+22344763..22346569expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0010207biological_processphotosystem II assembly
GO:0045037biological_processprotein import into chloroplast stroma
GO:0045038biological_processprotein import into chloroplast thylakoid membrane
GO:0009507cellular_componentchloroplast
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13481.1.S1_at--635--3671Chr07:22319329..22319353 (25 bp)
CTTTGCAGTTGGCTTGTTCCGTTTG
LOC_Os07g37250
Os.13481.1.S1_at--68--3451Chr07:22319324..22319348 (25 bp)
CAGTTGGCTTGTTCCGTTTGCTTGA
LOC_Os07g37250
Os.13481.1.S1_at--668--1231Chr07:22319323..22319347 (25 bp)
AGTTGGCTTGTTCCGTTTGCTTGAG
LOC_Os07g37250
Os.13481.1.S1_at--852--8491Chr07:22319320..22319344 (25 bp)
TGGCTTGTTCCGTTTGCTTGAGCTT
LOC_Os07g37250
Os.13481.1.S1_at--656--4931Chr07:22319318..22319342 (25 bp)
GCTTGTTCCGTTTGCTTGAGCTTGC
LOC_Os07g37250
Os.13481.1.S1_at--993--651Chr07:22319291..22319315 (25 bp)
ATGCAACAGAGCCAACCATACTAGA
LOC_Os07g37250
Os.13481.1.S1_at--546--5151Chr07:22319289..22319313 (25 bp)
GCAACAGAGCCAACCATACTAGACA
LOC_Os07g37250
Os.13481.1.S1_at--596--2491Chr07:22319287..22319311 (25 bp)
AACAGAGCCAACCATACTAGACAAG
LOC_Os07g37250
Os.13481.1.S1_at--844--5851Chr07:22319287..22319307 (21 bp)
GAGCCAACCATACTAGACAAGCTTT
LOC_Os07g37250
Os.13481.1.S1_at--545--3251NONE
CAACCATACTAGACAAGCTTTGCGC
NONE
Os.13481.1.S1_at--989--2211Chr07:22318142..22318163 (22 bp)
ACAAGCTTTGCGCTGCTCTAAACAT
LOC_Os07g37250
Target Sequence 
CTTTGCAGTTGGCTTGTTCCGTTTGCTTGAGCTTGCAAATGCAACAGAGCCAACCATACTAGACAAGCTTTGCGCTGCTC
TAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis