Browse Element(s) Details


Os.5797.1.S1_at

Description gb:AK101241.1
DB_XREF= gi:32986450
TID=Os.5797.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.5797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031P12, full insert sequence.
FL= gb:AK101241.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3735011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37300OsAffx.16593.1.S1_at11/117+22343802..22344275hypothetical protein
LOC_Os07g37310Os.23100.1.S1_at10/117+22344763..22346569expressed protein
LOC_Os07g37320Os.26932.1.S1_at11/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37320OsAffx.7485.1.S1_x_at1/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37330NANA7+22360837..22361230hypothetical protein
LOC_Os07g37340NANA7+22365611..22365910hypothetical protein
LOC_Os07g37350Os.5797.1.S1_at11/117+22368586..22370786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g37360Os.51851.1.S1_at4/117+22384653..22385267transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g37370OsAffx.28798.2.S1_s_at11/117+22388990..22390874hypothetical protein
LOC_Os07g37370OsAffx.28798.1.S1_at8/117+22388990..22390874hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5797.1.S1_at--85--10631Chr07:22369167..22369191 (25 bp)
TTCGTCCAGGAAGACCGCAACGTGG
LOC_Os07g37350
Os.5797.1.S1_at--443--3911Chr07:22369045..22369069 (25 bp)
CGGCCGCCGGAAGATCATGTCATCG
LOC_Os07g37350
Os.5797.1.S1_at--90--7131Chr07:22368941..22369051 (25 bp)
GTCATCGGAGCATCTCAGGAATCTC
LOC_Os07g37350
Os.5797.1.S1_at--1054--7631Chr07:22368859..22368883 (25 bp)
GGGAGCAAGCTCAGGAACATCTTCC
LOC_Os07g37350
Os.5797.1.S1_at--1033--10171Chr07:22368775..22368799 (25 bp)
TATACTACTGCTCGTATGGCCTTAG
LOC_Os07g37350
Os.5797.1.S1_at--914--10451Chr07:22368754..22368778 (25 bp)
TTAGCTAACACACATGTTCGCCTCA
LOC_Os07g37350
Os.5797.1.S1_at--641--8531Chr07:22368709..22368733 (25 bp)
TGGACGAATCAATCCCAAGTGTATT
LOC_Os07g37350
Os.5797.1.S1_at--384--9511Chr07:22368685..22368709 (25 bp)
TCTACTACTCCACTCGATGATGAAT
LOC_Os07g37350
Os.5797.1.S1_at--828--1351Chr07:22368649..22368673 (25 bp)
AGAGAACTCATCACTCATCCTCTGT
LOC_Os07g37350
Os.5797.1.S1_at--740--3531Chr07:22368634..22368658 (25 bp)
CATCCTCTGTGTATACTAGCTCATC
LOC_Os07g37350
Os.5797.1.S1_at--83--1591Chr07:22368617..22368641 (25 bp)
AGCTCATCTCATCCGTGTCAAATAA
LOC_Os07g37350
Target Sequence 
TTCGTCCAGGAAGACCGCAACGTGGCGCAGGTACTGCAGCTGCTTGGCCCCGACGACGAGAAGCTCTCGCCGGCGAAGCG
CTTCTTGCTCTCNNCCNTNATGCACCTCAGCGNCAGCACCTCCGGCCGCCGGAAGATCATGTCATCGGAGCATCTCAGGA
ATCTCGAGAGGCTAGCAGAGACGAACGTGACGGACGCCAANAAGATCGTGAAGAAGCTTGGCGGGAGCAAGCTCAGGAAC
ATCTTCCATGGCATCTGGAGCCTGCAGAAAGCTTGACGACGACAAGAACCAGCTCNCCGCTAGTACTATACTACTGCTCG
TATGGCCTTAGCTAACACACATGTTCGCCTCATGTTTTTTTGTAACCGTGAATGGACGAATCAATCCCAAGTGTATTCTA
CTACTCCACTCGATGATGAATTCTTGATACTCAGAGAACTCATCACTCATCCTCTGTGTATACTAGCTCATCTCATCCGT
GTCAAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis