Browse Element(s) Details


Os.3391.1.S1_at

Description gb:AK064679.1
DB_XREF= gi:32974697
TID=Os.3391.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3391 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for myb factor, 1402 bp
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-H05, full insert sequence.
FL= gb:AK064679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2362011/11typical P-type R2R3 Myb protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23570NANA9+14006973..14008919Leucine Rich Repeat family protein, expressed
LOC_Os09g23580OsAffx.20695.1.S1_x_at1/119+14012383..14012973hypothetical protein
LOC_Os09g23590Os.6861.1.S1_at11/119+14019194..14019798expressed protein
LOC_Os09g23599NANA9+14021696..14022026NA
LOC_Os09g23610OsAffx.29992.1.S1_at11/119+14024469..14025794hypothetical protein
LOC_Os09g23620Os.3391.1.S1_at11/119+14028431..14029989typical P-type R2R3 Myb protein, putative, expressed
LOC_Os09g23620Os.57514.1.S1_x_at1/119+14028431..14029989typical P-type R2R3 Myb protein, putative, expressed
LOC_Os09g23630NANA9+14038994..14039215hypothetical protein
LOC_Os09g23640NANA9+14045753..14049423ABC-2 type transporter family protein
LOC_Os09g23650Os.15565.1.A1_at11/119+14049929..14052565Hsc70-interacting protein, putative, expressed
LOC_Os09g23650OsAffx.31610.1.S1_x_at11/119+14049929..14052565Hsc70-interacting protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3391.1.S1_at--261--7491Chr09:14029510..14029534 (25 bp)
GTGGGAGTTCGAGGATCCGTTCAAC
LOC_Os09g23620
Os.3391.1.S1_at--857--991Chr09:14029521..14029545 (25 bp)
AGGATCCGTTCAACGCGTACCAGAG
LOC_Os09g23620
Os.3391.1.S1_at--903--3851Chr09:14029536..14029560 (25 bp)
CGTACCAGAGGATCGCGTTGTTTGA
LOC_Os09g23620
Os.3391.1.S1_at--435--1871Chr09:14029569..14029593 (25 bp)
ACGAGCTGACGTGGGCTTGACGTAA
LOC_Os09g23620
Os.3391.1.S1_at--368--8291Chr09:14029582..14029606 (25 bp)
GGCTTGACGTAACCACTTCTGAATT
LOC_Os09g23620
Os.3391.1.S1_at--344--3851Chr09:14029600..14029624 (25 bp)
CTGAATTTTCTCTTGTTTCATACTC
LOC_Os09g23620
Os.3391.1.S1_at--657--1171Chr09:14029687..14029711 (25 bp)
AGTACAAATTTCATCTCGGCGCTAG
LOC_Os09g23620
Os.3391.1.S1_at--478--9451Chr09:14029702..14029726 (25 bp)
TCGGCGCTAGCTGCACTTAGTGATT
LOC_Os09g23620
Os.3391.1.S1_at--191--9971Chr09:14029730..14029754 (25 bp)
TACCATTGGATTATTAGTGCCCTAA
LOC_Os09g23620
Os.3391.1.S1_at--464--3011Chr09:14029838..14029862 (25 bp)
AATGCATGAGCTAGCCCTCTTTAAT
LOC_Os09g23620
Os.3391.1.S1_at--458--10531Chr09:14029903..14029927 (25 bp)
TTCAGGCTTCTTTTAGATACATGTG
LOC_Os09g23620
Target Sequence 
GTGGGAGTTCGAGGATCCGTTCAACGCGTACCAGAGGATCGCGTTGTTTGATCACCACCACGAGCTGACGTGGGCTTGAC
GTAACCACTTCTGAATTTTCTCTTGTTTCATACTCCCTCGGTCTCATAATATAAGAGATTTATTGTACCGGGATCTATTA
TATTATGAGATGGAGGGAGTACAAATTTCATCTCGGCGCTAGCTGCACTTAGTGATTTATTACCATTGGATTATTAGTGC
CCTAATTAAACAATTAGAGATAGGATTAAGAACATATATAAGATGATAAAAAAAAAGGTGAAGTGGTTGTGTGAGAGAGA
GAGAGACAAATGCATGAGCTAGCCCTCTTTAATTTCGNCTTTCTGTCATTTTTTTTTCTGCTCATCATTTTTTTTCAGGC
TTCTTTTAGATACATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis