Browse Element(s) Details


OsAffx.29992.1.S1_at

Description tigr:9637.m02024
TID=OsAffx.29992.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2361011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23560Os.5983.1.S1_at3/119+14000191..14002138oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g23570NANA9+14006973..14008919Leucine Rich Repeat family protein, expressed
LOC_Os09g23580OsAffx.20695.1.S1_x_at1/119+14012383..14012973hypothetical protein
LOC_Os09g23590Os.6861.1.S1_at11/119+14019194..14019798expressed protein
LOC_Os09g23599NANA9+14021696..14022026NA
LOC_Os09g23610OsAffx.29992.1.S1_at11/119+14024469..14025794hypothetical protein
LOC_Os09g23620Os.3391.1.S1_at11/119+14028431..14029989typical P-type R2R3 Myb protein, putative, expressed
LOC_Os09g23620Os.57514.1.S1_x_at1/119+14028431..14029989typical P-type R2R3 Myb protein, putative, expressed
LOC_Os09g23630NANA9+14038994..14039215hypothetical protein
LOC_Os09g23640NANA9+14045753..14049423ABC-2 type transporter family protein
LOC_Os09g23650Os.15565.1.A1_at11/119+14049929..14052565Hsc70-interacting protein, putative, expressed
LOC_Os09g23650OsAffx.31610.1.S1_x_at11/119+14049929..14052565Hsc70-interacting protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29992.1.S1_at--320--5251Chr09:14024499..14024523 (25 bp)
GAATCATCAATACATGCAGCAGGTG
LOC_Os09g23610
OsAffx.29992.1.S1_at--675--3071Chr09:14024500..14024524 (25 bp)
AATCATCAATACATGCAGCAGGTGA
LOC_Os09g23610
OsAffx.29992.1.S1_at--130--431Chr09:14024501..14024525 (25 bp)
ATCATCAATACATGCAGCAGGTGAT
LOC_Os09g23610
OsAffx.29992.1.S1_at--461--331Chr09:14024508..14024532 (25 bp)
ATACATGCAGCAGGTGATGATCAAC
LOC_Os09g23610
OsAffx.29992.1.S1_at--363--2111Chr09:14024510..14024534 (25 bp)
ACATGCAGCAGGTGATGATCAACAA
LOC_Os09g23610
OsAffx.29992.1.S1_at--190--651Chr09:14024512..14024536 (25 bp)
ATGCAGCAGGTGATGATCAACAAAA
LOC_Os09g23610
OsAffx.29992.1.S1_at--737--3391Chr09:14024515..14024539 (25 bp)
CAGCAGGTGATGATCAACAAAATGT
LOC_Os09g23610
OsAffx.29992.1.S1_at--139--731Chr09:14024536..14024560 (25 bp)
ATGTCAAAAGAGGTGTGGTTATGGA
LOC_Os09g23610
OsAffx.29992.1.S1_at--557--6792Chr09:14024553..14024577 (25 bp)
GTTATGGAGTGTGTCAGGAGCTCAA
LOC_Os09g23610
OsAffx.29992.1.S1_at--268--10431Chr09:14024554..14024578 (25 bp)
TTATGGAGTGTGTCAGGAGCTCAAG
LOC_Os09g23610
OsAffx.29992.1.S1_at--453--9731Chr09:14024574..14025055 (25 bp)
TCAAGGAGTGCCGACCGTTTATTTT
LOC_Os09g23610
Target Sequence 
GAATCATCAATACATGCAGCAGGTGATGATCAACAAAATGTCAAAAGAGGTGTGGTTATGGAGTGTGTCAGGAGCTCAAG
GAGTGCCGACCGTTTATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis