Browse Element(s) Details


Os.34462.1.S1_at

Description gb:AK071303.1
DB_XREF= gi:32981326
TID=Os.34462.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Ras-related GTP-binding protein (P0005H10.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087L18, full insert sequence.
FL= gb:AK071303.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6295011/11Ras-related protein Rab11C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62910Os.42431.1.S1_at11/111+36765797..36769793pentatricopeptide, putative, expressed
LOC_Os01g62920Os.19639.1.S1_at11/111+36772211..36776800homeodomain protein JUBEL2, putative, expressed
LOC_Os01g62920Os.42388.1.S1_x_at1/111+36772211..36776800homeodomain protein JUBEL2, putative, expressed
LOC_Os01g62950Os.34462.1.S1_at11/111+36794768..36797290Ras-related protein Rab11C, putative, expressed
LOC_Os01g62960OsAffx.27770.1.S1_x_at4/111+36804898..36805519hypothetical protein
LOC_Os01g62970Os.20863.1.S1_at11/111+36807359..36810839expressed protein
LOC_Os01g62970Os.20863.2.S1_x_at8/111+36807359..36810839expressed protein
LOC_Os01g62980Os.51480.1.S1_x_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62980Os.51480.1.S1_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62990OsAffx.23897.1.S1_at11/111+36812434..36816566pollen-specific kinase partner protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34462.1.S1_at--21--9531Chr01:36795300..36795324 (25 bp)
TCTACGATCAGTCCCCGAGGAAGAT
LOC_Os01g62950
Os.34462.1.S1_at--5--1331Chr01:36795279..36795303 (25 bp)
AGATGGCCATGCGTTCTCTGAGAAA
LOC_Os01g62950
Os.34462.1.S1_at--902--2731Chr01:36795256..36795280 (25 bp)
AAGAAGGTCTCTCCTTCCTTGAGAC
LOC_Os01g62950
Os.34462.1.S1_at--6--10771Chr01:36795238..36795262 (25 bp)
TTGAGACGTCTGCTCTGGAAGCGAT
LOC_Os01g62950
Os.34462.1.S1_at--648--2711Chr01:36795154..36795178 (25 bp)
AAGCACTTGCAGCTCAGGAATCCGC
LOC_Os01g62950
Os.34462.1.S1_at--876--9931Chr01:36795099..36795123 (25 bp)
TACGATCAACGTTGCTGAAGCTCCA
LOC_Os01g62950
Os.34462.1.S1_at--472--4531Chr01:36795074..36795098 (25 bp)
GCCGCCACAAAAGGTTCTTGCTGTT
LOC_Os01g62950
Os.34462.1.S1_at--695--5411Chr01:36794937..36794961 (25 bp)
GAAGCCCATGACTGGTACTCCTTAT
LOC_Os01g62950
Os.34462.1.S1_at--1067--9951Chr01:36794897..36794921 (25 bp)
TACCGTACACTATAACCTGCCTGAA
LOC_Os01g62950
Os.34462.1.S1_at--884--3131Chr01:36794845..36794869 (25 bp)
AATTAACTTACCATGGCATCCGCTT
LOC_Os01g62950
Os.34462.1.S1_at--381--851Chr01:36794833..36794857 (25 bp)
ATGGCATCCGCTTGTATACTTTGGG
LOC_Os01g62950
Target Sequence 
TCTACGATCAGTCCCCGAGGAAGATGGCCATGCGTTCTCTGAGAAAGAAGGTCTCTCCTTCCTTGAGACGTCTGCTCTGG
AAGCGATTAATGTGGAGAAAGCATTCCATACTGTATTGAGTGAAATTCACCAGATTGTAAGCAAGAAAGCACTTGCAGCT
CAGGAATCCGCGTCTACAAATGGGCGTTCCATGCAAGGAACTACGATCAACGTTGCTGAAGCTCCAGCCGCCACAAAAGG
TTCTTGCTGTTCTAGTTAAAAAAGACTTTTCTAAAGGAAAAGATCTTTCGAAGCGTTTGTTTTTGCAGAACTGCAGAACC
AAATAGGCTAATANCTGGTTTCACATAATNCTGTCTTCTCATACCGAAGCCCATGACTGGTACTCCTTATCACAAGGAAC
ATTTCTACCGTACACTATAACCTGCCTGAATCAAAACATTTCCATTTTGTATTTATGAATTAACTTACCATGGCATCCGC
TTGTATACTTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis