Browse Element(s) Details


Os.20863.2.S1_x_at

Description gb:NM_190608.1
DB_XREF= gi:34908299
GEN=P0005H10.22
TID=Os.20863.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20863 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0005H10.22 (P0005H10.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0005H10.22 (P0005H10.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g629708/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62950Os.34462.1.S1_at11/111+36794768..36797290Ras-related protein Rab11C, putative, expressed
LOC_Os01g62960OsAffx.27770.1.S1_x_at4/111+36804898..36805519hypothetical protein
LOC_Os01g62970Os.20863.1.S1_at11/111+36807359..36810839expressed protein
LOC_Os01g62970Os.20863.2.S1_x_at8/111+36807359..36810839expressed protein
LOC_Os01g62980Os.51480.1.S1_x_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62980Os.51480.1.S1_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62990OsAffx.23897.1.S1_at11/111+36812434..36816566pollen-specific kinase partner protein, putative, expressed
LOC_Os01g63000Os.28824.1.S1_at3/111+36822985..36823191expressed protein
LOC_Os01g63010Os.16018.1.S1_at11/111+36823635..36825014ENOD18 protein, putative, expressed
LOC_Os01g63020OsAffx.23898.1.S1_at11/111+36826948..36830514hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20863.2.S1_x_at--464--6951Chr01:36807073..36807097 (25 bp)
GTAGACGATCGGAGGATCTCGCCGT
NONE
Os.20863.2.S1_x_at--887--9051Chr01:36807097..36807121 (25 bp)
TGCATCGCGTGCTTTTTCGGCCATG
NONE
Os.20863.2.S1_x_at--613--8831Chr01:36807140..36807164 (25 bp)
TGATTTCGCCGCCACTTGTAGCATC
NONE
Os.20863.2.S1_x_at--1111--2291Chr01:36807732..36807756 (25 bp)
AAATGGAGCCCAAGAGGTCCCCTGC
LOC_Os01g62970
Os.20863.2.S1_x_at--513--5451Chr01:36808420..36808444 (25 bp)
GAACGGGACTGCACAAGCTGGGACT
LOC_Os01g62970
Os.20863.2.S1_x_at--1132--6151Chr01:36808898..36808922 (25 bp)
GATGGTAAATCCCAGTGGACTCCTC
LOC_Os01g62970
Os.20863.2.S1_x_at--627--1091Chr01:36808911..36808935 (25 bp)
AGTGGACTCCTCCTAAAAGTCGCAC
LOC_Os01g62970
Os.20863.2.S1_x_at--545--10111Chr01:36808970..36808994 (25 bp)
TATGATTCGGTTGATACGTCCTGTT
LOC_Os01g62970
Os.20863.2.S1_x_at--554--4011Chr01:36808986..36809010 (25 bp)
CGTCCTGTTTTGGTTCTTCTGTGAA
LOC_Os01g62970
Os.20863.2.S1_x_at--879--5691Chr01:36809024..36809048 (25 bp)
GACTATTATGGAATCTCTGGACACA
LOC_Os01g62970
Os.20863.2.S1_x_at--620--2311Chr01:36809217..36809241 (25 bp)
AAAGGACCCTTCCACAGATTCTCAT
LOC_Os01g62970
Target Sequence 
GTAGACGATCGGAGGATCTCGCCGTGCATCGCGTGCTTTTTCGGCCATGCACCTCTCGTCGTCTTCCTGATTTCGCCGCC
ACTTGTAGCATCTGCCCCTCTCCCTTTCGACCCCAACAAATGGAGCCCAAGAGGTCCCCTGCGCTGCCGCAGCCCAACGT
GGAGACCAAGAAGTCCCCTCCCCGCGCTGCCGCCGGAGGAGGCGGCGGCGGCACAGCTGCCGTCGGTGGCGAGTCGCCGT
TGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGCAAAAGGCAAAGAAGACATATACTCCATTTTCTACAAAGGGCAGAAC
GGGACTGCACAAGCTGGGACTGCAGATGGTAAATCCCAGTGGACTCCTCCTAAAAGTCGCACCGTGTACACCAAGGATAA
CAAACAGTCAAATCAGTATGATTCGGTTGATACGTCCTGTTTTGGTTCTTCTGTGAACTATGGTGGTCGAGACTATTATG
GAATCTCTGGACACAAGCAATCCACAGAATCCAATGATTATAAGGCGGACAAAAAGGACCCTTCCACAGATTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20863.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis