Browse Element(s) Details


Os.16018.1.S1_at

Description gb:AK108159.1
DB_XREF= gi:32993368
TID=Os.16018.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16018 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-G10, full insert sequence.
FL= gb:AK108159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6301011/11ENOD18 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62960OsAffx.27770.1.S1_x_at4/111+36804898..36805519hypothetical protein
LOC_Os01g62970Os.20863.1.S1_at11/111+36807359..36810839expressed protein
LOC_Os01g62970Os.20863.2.S1_x_at8/111+36807359..36810839expressed protein
LOC_Os01g62980Os.51480.1.S1_x_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62980Os.51480.1.S1_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62990OsAffx.23897.1.S1_at11/111+36812434..36816566pollen-specific kinase partner protein, putative, expressed
LOC_Os01g63000Os.28824.1.S1_at3/111+36822985..36823191expressed protein
LOC_Os01g63010Os.16018.1.S1_at11/111+36823635..36825014ENOD18 protein, putative, expressed
LOC_Os01g63020OsAffx.23898.1.S1_at11/111+36826948..36830514hypothetical protein
LOC_Os01g63030Os.45774.1.S1_at9/111+36839516..36843462transposon protein, putative, unclassified
LOC_Os01g63040OsAffx.31018.3.S1_x_at11/111+36844189..36848735hypothetical protein
LOC_Os01g63040OsAffx.31018.2.S1_x_at11/111+36844189..36848735hypothetical protein
LOC_Os01g63040Os.50578.1.S1_x_at7/111+36844189..36848735hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16018.1.S1_at--1007--3051Chr01:36824286..36824310 (25 bp)
AATCTCGAATCGCTCGTCATGGGCA
LOC_Os01g63010
Os.16018.1.S1_at--825--2011Chr01:36824034..36824058 (25 bp)
ACTACGTGCTGTCGAATGCGTCTTG
LOC_Os01g63010
Os.16018.1.S1_at--792--2831Chr01:36823987..36824011 (25 bp)
AAGTAGTCGCTACTCTTACAGCAAT
LOC_Os01g63010
Os.16018.1.S1_at--611--10791Chr01:36823917..36823941 (25 bp)
TTGTACCCTAACTTGTCACCTAATA
LOC_Os01g63010
Os.16018.1.S1_at--714--1171Chr01:36823893..36823917 (25 bp)
AGTACTGCAGTGCTGTTTCATTTGC
LOC_Os01g63010
Os.16018.1.S1_at--102--9771Chr01:36823837..36823861 (25 bp)
TAATCCTGGATGTCTTTGTTTGCTG
LOC_Os01g63010
Os.16018.1.S1_at--643--9551Chr01:36823825..36823849 (25 bp)
TCTTTGTTTGCTGTTGTACCTGGAA
LOC_Os01g63010
Os.16018.1.S1_at--112--8191Chr01:36823797..36823821 (25 bp)
GGAAGCCTGGAATCGTAATACATGT
LOC_Os01g63010
Os.16018.1.S1_at--437--3271Chr01:36823711..36823735 (25 bp)
CAACACTGGCAGGTACGCTGTACAT
LOC_Os01g63010
Os.16018.1.S1_at--156--331Chr01:36823683..36823707 (25 bp)
ATACATCTGCACTAGGCACACTGTG
LOC_Os01g63010
Os.16018.1.S1_at--557--5591Chr01:36823659..36823683 (25 bp)
GAAATCTGAGTTATCCTTGTTCAAA
LOC_Os01g63010
Target Sequence 
AATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGGANTCTGCTGGGAAGTGTGACTAACTACGT
GCTGTCGAATGCGTCTTGCCCTGTGACCGTCGTCAAGGCAAAGTAGTCGCTACTCTTACAGCAATGCAAACCTGCATCCT
GGACAGAAACAATCCAATGTATATTGCGTGTTGTACCCTAACTTGTCACCTAATAGTACTGCAGTGCTGTTTCATTTGCA
GCTGTATTGGAGTATGTCCGTATAGTTGAATAATCCTGGATGTCTTTGTTTGCTGTTGTACCTGGAAGCTGGAAGCCTGG
AATCGTAATACATGTTGTTAGTTCTGAANANGTTACTGCTATCTTTAAAAGAAAGACNTTAATTAGCCCAACACGGCAAC
ACTGGCAGGTACGCTGTACATTTTATACATCTGCACTAGGCACACTGTGAAATCTGAGTTATCCTTGTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis