Browse Element(s) Details


OsAffx.23897.1.S1_at

Description gb:NM_190609.1
DB_XREF= gi:34908301
GEN=P0005H10.23
TID=OsAffx.23897.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0005H10.23 (P0005H10.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6299011/11pollen-specific kinase partner protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62950Os.34462.1.S1_at11/111+36794768..36797290Ras-related protein Rab11C, putative, expressed
LOC_Os01g62960OsAffx.27770.1.S1_x_at4/111+36804898..36805519hypothetical protein
LOC_Os01g62970Os.20863.1.S1_at11/111+36807359..36810839expressed protein
LOC_Os01g62970Os.20863.2.S1_x_at8/111+36807359..36810839expressed protein
LOC_Os01g62980Os.51480.1.S1_x_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62980Os.51480.1.S1_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62990OsAffx.23897.1.S1_at11/111+36812434..36816566pollen-specific kinase partner protein, putative, expressed
LOC_Os01g63000Os.28824.1.S1_at3/111+36822985..36823191expressed protein
LOC_Os01g63010Os.16018.1.S1_at11/111+36823635..36825014ENOD18 protein, putative, expressed
LOC_Os01g63020OsAffx.23898.1.S1_at11/111+36826948..36830514hypothetical protein
LOC_Os01g63030Os.45774.1.S1_at9/111+36839516..36843462transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005089molecular_functionRho guanyl-nucleotide exchange factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23897.1.S1_at--1042--10691Chr01:36813032..36813056 (25 bp)
TTGCCGAACGAGCAGAGGGCCTACT
LOC_Os01g62990
OsAffx.23897.1.S1_at--291--6131Chr01:36813018..36813042 (25 bp)
GAGGGCCTACTGATATGTTTGAAGC
LOC_Os01g62990
OsAffx.23897.1.S1_at--900--2311Chr01:36812993..36813017 (25 bp)
AAAGGTTTCCTGGACTGACGCAGAC
LOC_Os01g62990
OsAffx.23897.1.S1_at--200--5731Chr01:36812981..36813005 (25 bp)
GACTGACGCAGACAAGCTTGGACAT
LOC_Os01g62990
OsAffx.23897.1.S1_at--927--6011Chr01:36812790..36812814 (25 bp)
GAGAGTCTGGCGTCCAACATTGTCG
LOC_Os01g62990
OsAffx.23897.1.S1_at--633--651Chr01:36812723..36812747 (25 bp)
ATGCAGAGCATTTTCCACAGGGTGA
LOC_Os01g62990
OsAffx.23897.1.S1_at--706--5131Chr01:36812678..36812702 (25 bp)
GCAACAAGGCTGCTGTTCCACCGTA
LOC_Os01g62990
OsAffx.23897.1.S1_at--631--2171Chr01:36812634..36812658 (25 bp)
ACACCGTTTGTGACCGCATATGCGA
LOC_Os01g62990
OsAffx.23897.1.S1_at--679--8391Chr01:36812593..36812617 (25 bp)
GGCGCAGCTTGCAAGCCCATCAAAG
LOC_Os01g62990
OsAffx.23897.1.S1_at--690--1071Chr01:36812545..36812569 (25 bp)
AGGGAGACGGTCTTACAGCAACAGG
LOC_Os01g62990
OsAffx.23897.1.S1_at--1078--2651Chr01:36812504..36812528 (25 bp)
AAGCCTTGGCAATTGATCTAGTTAA
LOC_Os01g62990
Target Sequence 
TTGCCGAACGAGCAGAGGGCCTACTGATATGTTTGAAGCAAAGGTTTCCTGGACTGACGCAGACAAGCTTGGACATGAGC
AAAATTCAGTATAACAGGGATGTGGGTAAATCAATACTGGAGAGTTATTCAAGGGTGCTGGAGAGTCTGGCGTCCAACAT
TGTCGCTCGCATCGACGACCTACTGAACATCGATGAACTGAACAGGCATGCAGAGCATTTTCCACAGGGTGATGCAGATT
GCAGGATTGCTTGCAACAAGGCTGCTGTTCCACCGTACCAAGTGCCTGCCTCAGGCACACCGTTTGTGACCGCATATGCG
ACGCCCAGCTTCTCGCCGGCGCAGCTTGCAAGCCCATCAAAGAAAGAGAGGAGCCCACTGGGTGCAGGGAGACGGTCTTA
CAGCAACAGGGGGTTTGGCGCAAAGAAAGCCTTGGCAATTGATCTAGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis