Browse Element(s) Details


Os.34697.1.S1_at

Description gb:AK070483.1
DB_XREF= gi:32980507
TID=Os.34697.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.34697 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049G07, full insert sequence.
FL= gb:AK070483.1 gb:AK059742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3945011/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39440Os.8483.1.S1_at11/114+23273840..23276266Ras-related protein Rab-2-B, putative, expressed
LOC_Os04g39450Os.34697.1.S1_at11/114+23280931..23283511Uncharacterised protein family containing protein, expressed
LOC_Os04g39460OsAffx.14204.1.S1_at11/114+23287746..23290532NB-ARC domain containing protein, expressed
LOC_Os04g39470OsAffx.14205.1.S1_at11/114+23291540..23292855Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g39489Os.7445.1.S1_at11/114+23293688..23303872amino acid transporter family protein, putative, expressed
LOC_Os04g39510OsAffx.26390.1.S1_at11/114+23305096..23306172hypothetical protein
LOC_Os04g39520OsAffx.4030.1.S1_at11/114+23308226..23313262Zinc finger, C2H2 type family protein
LOC_Os04g39520OsAffx.6586.1.S1_at1/114+23308226..23313262Zinc finger, C2H2 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34697.1.S1_at--841--2651Chr04:23281765..23281789 (25 bp)
AAGCCTTGTTTTAGGTGTTGCACCA
LOC_Os04g39450
Os.34697.1.S1_at--501--10131Chr04:23281278..23281392 (25 bp)
TATGCATCTCTGAGCACTGCCATGG
LOC_Os04g39450
Os.34697.1.S1_at--1107--831Chr04:23281257..23281281 (25 bp)
ATGGCTTGTTTCTACGCTTATGTGC
LOC_Os04g39450
Os.34697.1.S1_at--194--8511Chr04:23281196..23281220 (25 bp)
TGGCAGCAACTCCATCATCATAGAG
LOC_Os04g39450
Os.34697.1.S1_at--731--3471Chr04:23281171..23281195 (25 bp)
CAGGATCCAGGCATTTTCTTAGTGA
LOC_Os04g39450
Os.34697.1.S1_at--237--2611Chr04:23281144..23281168 (25 bp)
AACGCGACAGGATGATTTGGCCTTT
LOC_Os04g39450
Os.34697.1.S1_at--1122--4291Chr04:23281124..23281148 (25 bp)
CCTTTGTGCCTTTTAATGCTTTGTC
LOC_Os04g39450
Os.34697.1.S1_at--529--371Chr04:23281074..23281098 (25 bp)
ATCATCCCATTTGTATATTCCCTAA
LOC_Os04g39450
Os.34697.1.S1_at--744--91Chr04:23281058..23281082 (25 bp)
ATTCCCTAATCTTACATTCTCTGTG
LOC_Os04g39450
Os.34697.1.S1_at--52--10591Chr04:23281042..23281066 (25 bp)
TTCTCTGTGGATTTTGGTTGTTGTA
LOC_Os04g39450
Os.34697.1.S1_at--973--3531Chr04:23280975..23280999 (25 bp)
CATCCTTACTGAACATTTTGCTCTT
LOC_Os04g39450
Target Sequence 
AAGCCTTGTTTTAGGTGTTGCACCAGGGCTCACCACGCTCTTTCTTGGTACCCTCAGTCTTAAATTCTGGAGGAGTGGAA
AATCCAGTTTCATATTTATCTTGGGCCAAGCAGCAATTTCTGCTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTG
ACAAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAGCACTGCCATGGCTTGTTTCTACGCTTATGTGCTGCTCTC
CGGAGGAAATCCACCACCTAAGAAGAAGATGGCAGCAACTCCATCATCATAGAGCAGGATCCAGGCATTTTCTTAGTGAT
TAACGCGACAGGATGATTTGGCCTTTGTGCCTTTTAATGCTTTGTCTGCAAGTATAACAGAATTTTGAGTTATCATCCCA
TTTGTATATTCCCTAATCTTACATTCTCTGTGGATTTTGGTTGTTGTAGCGTGAAGCTTTTTGAACAAATAATTCTGCAG
GATGGCAATCCATCCTTACTGAACATTTTGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis