Browse Element(s) Details


OsAffx.14205.1.S1_at

Description tigr:9632.m03741
TID=OsAffx.14205.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3947011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39440Os.8483.1.S1_at11/114+23273840..23276266Ras-related protein Rab-2-B, putative, expressed
LOC_Os04g39450Os.34697.1.S1_at11/114+23280931..23283511Uncharacterised protein family containing protein, expressed
LOC_Os04g39460OsAffx.14204.1.S1_at11/114+23287746..23290532NB-ARC domain containing protein, expressed
LOC_Os04g39470OsAffx.14205.1.S1_at11/114+23291540..23292855Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g39489Os.7445.1.S1_at11/114+23293688..23303872amino acid transporter family protein, putative, expressed
LOC_Os04g39510OsAffx.26390.1.S1_at11/114+23305096..23306172hypothetical protein
LOC_Os04g39520OsAffx.4030.1.S1_at11/114+23308226..23313262Zinc finger, C2H2 type family protein
LOC_Os04g39520OsAffx.6586.1.S1_at1/114+23308226..23313262Zinc finger, C2H2 type family protein
LOC_Os04g39530NANA4+23316323..23318391transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14205.1.S1_at--749--891Chr04:23292031..23292055 (25 bp)
AGGCCGACGACACCATCGAGCGCAT
LOC_Os04g39470
OsAffx.14205.1.S1_at--864--8411Chr04:23291908..23291932 (25 bp)
GGCCGCCCGGCGACATGTCCGAGGG
LOC_Os04g39470
OsAffx.14205.1.S1_at--148--7651Chr04:23291876..23291900 (25 bp)
GGGATGTACGCCACGTACAACCCGG
LOC_Os04g39470
OsAffx.14205.1.S1_at--309--751Chr04:23291873..23291897 (25 bp)
ATGTACGCCACGTACAACCCGGCGG
LOC_Os04g39470
OsAffx.14205.1.S1_at--544--1071Chr04:23291761..23291785 (25 bp)
AGGGCACGTCGATGTGGAGCCACCA
LOC_Os04g39470
OsAffx.14205.1.S1_at--944--1891Chr04:23291756..23291780 (25 bp)
ACGTCGATGTGGAGCCACCAGAGCC
LOC_Os04g39470
OsAffx.14205.1.S1_at--1062--4391Chr04:23291743..23291767 (25 bp)
GCCACCAGAGCCTGTACAGCGGGAG
LOC_Os04g39470
OsAffx.14205.1.S1_at--41--8751Chr04:23291731..23291755 (25 bp)
TGTACAGCGGGAGCTCCGGCACCGA
LOC_Os04g39470
OsAffx.14205.1.S1_at--814--1771Chr04:23291711..23291735 (25 bp)
ACCGAGGAGGCCAGGCGGGAGTTGC
LOC_Os04g39470
OsAffx.14205.1.S1_at--181--8811Chr04:23291584..23291608 (25 bp)
TGTTCGCCTCCGACTGCGTGCTCTG
LOC_Os04g39470
OsAffx.14205.1.S1_at--316--5711Chr04:23291573..23291597 (25 bp)
GACTGCGTGCTCTGGGACTTGCCCG
LOC_Os04g39470
Target Sequence 
AGGCCGACGACACCATCGAGCGCATCAAGCTCGGCCTGTCCCGCGCCATCATGAGCGATCCCTCCACCGCCTCCGCCGCC
GCCGCCGCCGCCGCGCCCTCCGCCCCCGCGGAGGACAAGCCGTGGCCGCCCGGCGACATGTCCGAGGGGCTCGCCGGGAT
GTACGCCACGTACAACCCGGCGGCGCACGCGCACGCGCAGGCCCAGGCCGAGTTCCGGTACGACGGGGCCTCCGCGGCGC
AGGGCTACGTCCTCGGCGGCGACGGCGACCAGGGCACGTCGATGTGGAGCCACCAGAGCCTGTACAGCGGGAGCTCCGGC
ACCGAGGAGGCCAGGCGGGAGTTGCCGGAGAAGGGCAACGACAGCGTCGGCAGCAGCGGCGGCGACGACGACGCCGCGGA
CGACGGCAAGGACAGCGGGAAGGGGGCAGCCTCCGACATGTCGGGCCTGTTCGCCTCCGACTGCGTGCTCTGGGACTTGC
CCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis