Browse Element(s) Details


Os.34729.1.S1_at

Description gb:AK070356.1
DB_XREF= gi:32980380
TID=Os.34729.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative short-chain alcohol dehydrogenase (P0034A04.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050B21, full insert sequence.
FL= gb:AK070356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g491209/11Sex determination protein tasselseed 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49110Os.15204.1.S1_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.15204.2.S1_x_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_x_at10/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_at9/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49120Os.34729.2.S1_x_at11/117+29416212..29417498Sex determination protein tasselseed 2, putative, expressed
LOC_Os07g49120Os.34729.1.S1_at9/117+29416212..29417498Sex determination protein tasselseed 2, putative, expressed
LOC_Os07g49130NANA7+29426729..29427076hypothetical protein
LOC_Os07g49140OsAffx.22588.1.S1_at11/117+29429669..29433278expressed protein
LOC_Os07g49150Os.144.1.S1_at10/117+29434116..2943843726S protease regulatory subunit 4 homolog, putative, expressed
LOC_Os07g49160NANA7+29439544..29442432retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009688biological_processabscisic acid biosynthesis
GO:0010182biological_processsugar mediated signaling
GO:0005829cellular_componentcytosol
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34729.1.S1_at--392--8431Chr07:29416367..29416391 (25 bp)
GGCCTCTGAATTGAATCTCTCTCTC
LOC_Os07g49120
Os.34729.1.S1_at--120--3771Chr07:29416339..29416363 (25 bp)
CTCTTAGCTAATTACTATTTCAGTT
LOC_Os07g49120
Os.34729.1.S1_at--55--231Chr07:29416298..29416322 (25 bp)
ATATATAAGTCCGTGACCGTCCTCA
LOC_Os07g49120
Os.34729.1.S1_at--669--8931Chr07:29416285..29416309 (25 bp)
TGACCGTCCTCATCGATCATATGAT
LOC_Os07g49120
Os.34729.1.S1_at--636--6291Chr07:29416263..29416287 (25 bp)
GATGATCGATGGATGTACTCCCGCA
LOC_Os07g49120
Os.34729.1.S1_at--212--6251Chr07:29416256..29416280 (25 bp)
GATGGATGTACTCCCGCATGCTCGA
LOC_Os07g49120
Os.34729.1.S1_at--49--4991Chr07:29416241..29416265 (25 bp)
GCATGCTCGACTGTGCTGTCTGAAA
LOC_Os07g49120
Os.34729.1.S1_at--780--5731Chr07:29416233..29416257 (25 bp)
GACTGTGCTGTCTGAAATCTGATGA
LOC_Os07g49120
Os.34729.1.S1_at--630--6311Chr07:29416213..29416237 (25 bp)
GATGACTGAATTCCAGCACTTGCGC
LOC_Os07g49120
Os.34729.1.S1_at--111--3171Chr07:29416205..29416229 (25 bp)
AATTCCAGCACTTGCGCATTGTTGA
NONE
Os.34729.1.S1_at--804--5111Chr07:29416198..29416222 (25 bp)
GCACTTGCGCATTGTTGATTATTAT
NONE
Target Sequence 
GGCCTCTGAATTGAATCTCTCTCTCTCTCTCTTAGCTAATTACTATTTCAGTTATATATATATATATATATATATAAGTC
CGTGACCGTCCTCATCGATCATATGATGATCGATGGATGTACTCCCGCATGCTCGACTGTGCTGTCTGAAATCTGATGAC
TGAATTCCAGCACTTGCGCATTGTTGATTATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis