Browse Element(s) Details


Os.34729.2.S1_x_at

Description gb:NM_185552.1
DB_XREF= gi:34898189
GEN=P0034A04.5
TID=Os.34729.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34729 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative short-chain alcohol dehydrogenase (P0034A04.5), mRNA.
PROD=putative short-chain alcohol dehydrogenase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4912011/11Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g187401/11Sex determination protein tasselseed 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49110Os.15204.1.S1_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.15204.2.S1_x_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_x_at10/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_at9/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49120Os.34729.2.S1_x_at11/117+29416212..29417498Sex determination protein tasselseed 2, putative, expressed
LOC_Os07g49120Os.34729.1.S1_at9/117+29416212..29417498Sex determination protein tasselseed 2, putative, expressed
LOC_Os07g49130NANA7+29426729..29427076hypothetical protein
LOC_Os07g49140OsAffx.22588.1.S1_at11/117+29429669..29433278expressed protein
LOC_Os07g49150Os.144.1.S1_at10/117+29434116..2943843726S protease regulatory subunit 4 homolog, putative, expressed
LOC_Os07g49160NANA7+29439544..29442432retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009688biological_processabscisic acid biosynthesis
GO:0009908biological_processflower development
GO:0010182biological_processsugar mediated signaling
GO:0005829cellular_componentcytosol
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34729.2.S1_x_at--392--3912Chr03:10481568..10481591 (24 bp)
CTGGACGTGCTGTGCAACAACGCCG
LOC_Os03g18740
Os.34729.2.S1_x_at--1098--1811Chr07:29416916..29416940 (25 bp)
ACGCGCGGCGCCAAGAGCATCGCGT
LOC_Os07g49120
Os.34729.2.S1_x_at--1033--4271Chr07:29416836..29416860 (25 bp)
CCTCGGAATGAAGCACGCGGCGCGT
LOC_Os07g49120
Os.34729.2.S1_x_at--947--10071Chr07:29416708..29416732 (25 bp)
TAGTGGGGCTCACCAAGAACGCCGC
LOC_Os07g49120
Os.34729.2.S1_x_at--959--7531Chr07:29416631..29416655 (25 bp)
GTGGCGACGCCGATGCTGGTGAACG
LOC_Os07g49120
Os.34729.2.S1_x_at--498--391Chr07:29416582..29416606 (25 bp)
ATCACGCGGATGAGGATCAGGCGGC
LOC_Os07g49120
Os.34729.2.S1_x_at--152--7791Chr07:29416518..29416542 (25 bp)
GGTGCGGAGGCTGGCGACGCTCAAG
LOC_Os07g49120
Os.34729.2.S1_x_at--1018--9131Chr07:29416483..29416507 (25 bp)
TGCGGGCAGGCGACATCGCGGAGGC
LOC_Os07g49120
Os.34729.2.S1_x_at--734--4411Chr07:29416445..29416469 (25 bp)
GCCAGCGACGAGTCCAGGTACGTGT
LOC_Os07g49120
Os.34729.2.S1_x_at--167--1651Chr07:29416442..29416466 (25 bp)
AGCGACGAGTCCAGGTACGTGTCCG
LOC_Os07g49120
Os.34729.2.S1_x_at--32--1131Chr07:29416435..29416459 (25 bp)
AGTCCAGGTACGTGTCCGGCCACAA
LOC_Os07g49120
Target Sequence 
CTGGACGTGCTGTGCAACAACGCCGGGGTGCTGGGCCGCCAGACGCGCGGCGCCAAGAGCATCGCGTCCCTCGACGCCGC
CGAGTTCGCCCGCGTGCTGCGCGTCAACGCGCTGGGCGCCGCCCTCGGAATGAAGCACGCGGCGCGTGCCATGGTGCCCC
GCCGCTCCGGGAGCATCGTGTCGGTGGCGAGCGTGGCGGGCGTGCTGGGCGGCCTCGGCCCGCACGCGTACACGGCCTCC
AAGCACGCCCTAGTGGGGCTCACCAAGAACGCCGCCTGCGAGCTCGGGGAGCACGGCATCCGCGTCAACTGCATCTCCCC
CTTCGGCGTGGCGACGCCGATGCTGGTGAACGCGTGGCGGCAGGGGCAGGGAGGAGATCACGCGGATGAGGATCAGGCGG
CGGCGAGCGAGGAGGAGGAGGTGGAGAAGATGGAGGAGATGGTGCGGAGGCTGGCGACGCTCAAGGGGCCGACGCTGCGG
GCAGGCGACATCGCGGAGGCGGCGGTGTTCCTGGCCAGCGACGAGTCCAGGTACGTGTCCGGCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34729.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis