Browse Element(s) Details


Os.3494.1.S1_at

Description gb:AK105167.1
DB_XREF= gi:32990376
TID=Os.3494.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-E12, full insert sequence.
FL= gb:AK105167.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1209011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12060Os.14645.1.S1_s_at3/111+6555733..6556179hypothetical protein
LOC_Os01g12070Os.32667.1.S1_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12070Os.32667.2.S1_x_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12080Os.12263.1.S1_at11/111+6568846..6573967uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g12090Os.3494.1.S1_at11/111+6580489..6583909expressed protein
LOC_Os01g12100OsAffx.22100.1.S1_x_at11/111+6584147..6584745expressed protein
LOC_Os01g12100Os.54460.1.A1_at1/111+6584147..6584745expressed protein
LOC_Os01g12110Os.3496.1.S1_at11/111+6587702..6588938expressed protein
LOC_Os01g12120NANA1+6603323..6604041hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3494.1.S1_at--50--3791Chr01:6580765..6580789 (25 bp)
CTCGGCTACGGCATCAAGAAGCTCG
LOC_Os01g12090
Os.3494.1.S1_at--417--2871Chr01:6583432..6583455 (24 bp)
AAGGGCCAACTTATGCAAATGACCA
LOC_Os01g12090
Os.3494.1.S1_at--283--3231Chr01:6583479..6583503 (25 bp)
CAAGAACTCCACTACCTGAACAAGG
LOC_Os01g12090
Os.3494.1.S1_at--951--6911Chr01:6583550..6583574 (25 bp)
GTATGGTGTGGAGTTCATCAACGAG
LOC_Os01g12090
Os.3494.1.S1_at--1079--1051Chr01:6583587..6583611 (25 bp)
AGGGAGATGACGGACTTCCGCTACC
LOC_Os01g12090
Os.3494.1.S1_at--472--4851Chr01:6583606..6583630 (25 bp)
GCTACCGCACCAAAGACGAGGCCAG
LOC_Os01g12090
Os.3494.1.S1_at--1106--1871Chr01:6583621..6583645 (25 bp)
ACGAGGCCAGCGATGTCGATGAGTA
LOC_Os01g12090
Os.3494.1.S1_at--981--8031Chr01:6583685..6583709 (25 bp)
GGAGTAAGCTTTCATCGCATCTCTG
LOC_Os01g12090
Os.3494.1.S1_at--159--931Chr01:6583723..6583747 (25 bp)
AGGCAGATATTGTTGTCCACCAAAT
LOC_Os01g12090
Os.3494.1.S1_at--747--10551Chr01:6583779..6583803 (25 bp)
TTCTTCCCAGTTGTTCTAGATCATG
LOC_Os01g12090
Os.3494.1.S1_at--305--9471Chr01:6583831..6583855 (25 bp)
TCTGACGTTTGTGATGCGAATAAGC
LOC_Os01g12090
Target Sequence 
CTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCACCCTC
CTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGT
ATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGC
GATGTCGATGAGTATGANGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCT
CCCATACCGGCNAGGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTT
GTTCTAGATCATGGATAGCAAGTAGTAGCNTGTTTGTTTNTCTGACGTTTGTGATGCGAATAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis