Browse Element(s) Details


Os.35344.18.S1_x_at

Description gb:NM_185202.1
DB_XREF= gi:34897489
GEN=OSJNBb0043P23.7
TID=Os.35344.18
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35344 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative mutator-like transposase (OSJNBb0043P23.7), mRNA.
PROD=putative mutator-like transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4596011/11transposon protein, putative, Mutator sub-class
LOC_Os01g7189011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g2612011/11transposon protein, putative, Mutator sub-class
LOC_Os02g0420011/11transposon protein, putative, Mutator sub-class
LOC_Os07g3759011/11hypothetical protein
LOC_Os04g5815011/11Transposable element protein, putative, MuDR
LOC_Os03g6303011/11transposon protein, putative, Mutator sub-class
LOC_Os07g4253011/11transposon protein, putative, Mutator sub-class
LOC_Os02g0611011/11transposon protein, putative, Mutator sub-class
LOC_Os01g0496011/11transposon protein, putative, Mutator sub-class
LOC_Os02g4555011/11transposon protein, putative, Mutator sub-class
LOC_Os03g1916011/11transposon protein, putative, Mutator sub-class
LOC_Os10g4260011/11transposon protein, putative, Mutator sub-class
LOC_Os09g3239011/11transposon protein, putative, Mutator sub-class
LOC_Os03g0536011/11retrotransposon protein, putative, unclassified
LOC_Os06g3647011/11transposon protein, putative, Mutator sub-class
LOC_Os07g4065011/11transposon protein, putative, Mutator sub-class
LOC_Os05g3824011/11transposon protein, putative, Mutator sub-class
LOC_Os06g5032011/11transposon protein, putative, Mutator sub-class
LOC_Os09g3037011/11transposon protein, putative, Mutator sub-class
LOC_Os06g2558011/11Transposable element protein, putative, MuDR
LOC_Os06g0477011/11transposon protein, putative, Mutator sub-class
LOC_Os06g4201011/11Transposable element protein, putative, MuDR
LOC_Os03g4683011/11transposon protein, putative, Mutator sub-class
LOC_Os07g1806011/11transposon protein, putative, Mutator sub-class
LOC_Os12g4227011/11transposon protein, putative, Mutator sub-class
LOC_Os04g5406011/11transposon protein, putative, Mutator sub-class
LOC_Os07g4221010/11transposon protein, putative, Mutator sub-class
LOC_Os06g1290010/11transposon protein, putative, Mutator sub-class
LOC_Os07g2813010/11transposon protein, putative, Mutator sub-class
LOC_Os01g6442010/11hypothetical protein
LOC_Os12g1650010/11transposon protein, putative, Mutator sub-class
LOC_Os04g5147010/11Transposable element protein, putative, MuDR
LOC_Os06g1425010/11transposon protein, putative, Mutator sub-class
LOC_Os06g4190010/11transposon protein, putative, Mutator sub-class
LOC_Os04g1839010/11transposon protein, putative, Mutator sub-class
LOC_Os12g3172910/11Transposable element protein, putative, MuDR
LOC_Os03g1905010/11SWIM zinc finger family protein
LOC_Os02g1836010/11transposon protein, putative, Mutator sub-class
LOC_Os07g4298010/11transposon protein, putative, Mutator sub-class
LOC_Os06g4448010/11transposon protein, putative, Mutator sub-class
LOC_Os01g6822010/11transposon protein, putative, Mutator sub-class
LOC_Os01g1848010/11transposon protein, putative, Mutator sub-class
LOC_Os10g1816010/11Transposable element protein, putative, MuDR
LOC_Os07g3504010/11transposon protein, putative, Mutator sub-class
LOC_Os10g2479010/11transposon protein, putative, Mutator sub-class
LOC_Os09g2367010/11hypothetical protein
LOC_Os09g3890010/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g4779010/11transposon protein, putative, Mutator sub-class
LOC_Os01g5118010/11transposon protein, putative, Mutator sub-class
LOC_Os01g1204010/11Transposable element protein, putative, MuDR
LOC_Os03g1371010/11transposon protein, putative, Mutator sub-class
LOC_Os05g3575010/11hypothetical protein
LOC_Os11g0628010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g4023010/11transposon protein, putative, Mutator sub-class
LOC_Os07g1339010/11Transposable element protein, putative, MuDR
LOC_Os04g3099010/11transposon protein, putative, Mutator sub-class
LOC_Os09g1242010/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g0266010/11transposon protein, putative, Mutator sub-class
LOC_Os04g4780010/11transposon protein, putative, Mutator sub-class
LOC_Os09g3763010/11Transposable element protein, putative, MuDR
LOC_Os11g0912010/11hypothetical protein
LOC_Os07g1250010/11transposon protein, putative, Mutator sub-class
LOC_Os02g4187010/11Transposable element protein, putative, MuDR
LOC_Os06g3703010/11transposon protein, putative, Mutator sub-class
LOC_Os08g0545010/11transposon protein, putative, Mutator sub-class
LOC_Os12g3915010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g1183010/11Transposable element protein, putative, MuDR
LOC_Os06g3482010/11Transposable element protein, putative, MuDR
LOC_Os01g5422010/11transposon protein, putative, Mutator sub-class
LOC_Os02g1173010/11transposon protein, putative, Mutator sub-class
LOC_Os03g5313010/11transposon protein, putative, Mutator sub-class
LOC_Os12g2215010/11SWIM zinc finger family protein
LOC_Os10g3699010/11transposon protein, putative, Mutator sub-class
LOC_Os11g4366010/11transposon protein, putative, Mutator sub-class
LOC_Os06g1429010/11transposon protein, putative, Mutator sub-class
LOC_Os05g4076010/11Transposable element protein, putative, MuDR
LOC_Os07g3431010/11Transposable element protein, putative, MuDR
LOC_Os09g3782010/11transposon protein, putative, Mutator sub-class
LOC_Os02g582409/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g042909/11Transposable element protein, putative, MuDR
LOC_Os03g623509/11hypothetical protein
LOC_Os06g479909/11Transposable element protein, putative, MuDR
LOC_Os04g023509/11transposon protein, putative, Mutator sub-class
LOC_Os01g439709/11transposon protein, putative, Mutator sub-class
LOC_Os02g016909/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g738709/11transposon protein, putative, Mutator sub-class
LOC_Os02g099509/11transposon protein, putative, Mutator sub-class
LOC_Os07g302309/11transposon protein, putative, Mutator sub-class
LOC_Os05g080809/11transposon protein, putative, Mutator sub-class
LOC_Os11g430609/11transposon protein, putative, Mutator sub-class
LOC_Os04g593909/11transposon protein, putative, Mutator sub-class
LOC_Os01g608809/11transposon protein, putative, Mutator sub-class
LOC_Os08g036609/11transposon protein, putative, Mutator sub-class
LOC_Os07g128609/11transposon protein, putative, Mutator sub-class
LOC_Os01g268369/11transposon protein, putative, Mutator sub-class
LOC_Os07g172409/11transposon protein, putative, Mutator sub-class
LOC_Os01g272509/11transposon protein, putative, Mutator sub-class
LOC_Os03g137809/11transposon protein, putative, Mutator sub-class
LOC_Os01g610909/11transposon protein, putative, Mutator sub-class
LOC_Os11g255209/11transposon protein, putative, Mutator sub-class
LOC_Os07g461409/11Transposable element protein, putative, MuDR
LOC_Os07g337009/11transposon protein, putative, Mutator sub-class
LOC_Os05g085009/11transposon protein, putative, Mutator sub-class
LOC_Os02g091109/11SWIM zinc finger family protein
LOC_Os06g061109/11transposon protein, putative, Mutator sub-class
LOC_Os11g330809/11transposon protein, putative, Mutator sub-class
LOC_Os04g534809/11transposon protein, putative, Mutator sub-class
LOC_Os01g269169/11Transposable element protein, putative, MuDR
LOC_Os05g477209/11hypothetical protein
LOC_Os01g094909/11transposon protein, putative, Mutator sub-class
LOC_Os07g057708/11transposon protein, putative, Mutator sub-class
LOC_Os03g388208/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g563808/11transposon protein, putative, Mutator sub-class
LOC_Os06g192308/11hypothetical protein
LOC_Os08g068208/11transposon protein, putative, Mutator sub-class
LOC_Os01g352208/11transposon protein, putative, Mutator sub-class
LOC_Os05g507408/11Transposable element protein, putative, MuDR
LOC_Os04g538208/11transposon protein, putative, Mutator sub-class
LOC_Os01g369108/11Transposable element protein, putative, MuDR
LOC_Os04g099808/11transposon protein, putative, Mutator sub-class
LOC_Os05g459708/11transposon protein, putative, Mutator sub-class
LOC_Os11g358808/11transposon protein, putative, Mutator sub-class
LOC_Os02g466308/11SWIM zinc finger family protein
LOC_Os08g348108/11transposon protein, putative, Mutator sub-class
LOC_Os11g178308/11transposon protein, putative, Mutator sub-class
LOC_Os05g068508/11calcineurin-like phosphoesterase family protein, putative
LOC_Os11g444108/11transposon protein, putative, Mutator sub-class
LOC_Os02g033508/11transposon protein, putative, Mutator sub-class
LOC_Os07g325808/11Transposable element protein, putative, MuDR
LOC_Os01g470008/11transposon protein, putative, Mutator sub-class
LOC_Os10g325608/11transposon protein, putative, Mutator sub-class
LOC_Os09g283308/11transposon protein, putative, Mutator sub-class
LOC_Os11g332908/11Transposable element protein, putative, MuDR
LOC_Os10g332207/11Transposable element protein, putative, MuDR
LOC_Os01g207607/11SWIM zinc finger family protein
LOC_Os06g202107/11transposon protein, putative, Mutator sub-class
LOC_Os06g383607/11hypothetical protein
LOC_Os10g221647/11transposon protein, putative, Mutator sub-class
LOC_Os10g286507/11transposon protein, putative, Mutator sub-class
LOC_Os04g253307/11transposon protein, putative, Mutator sub-class
LOC_Os02g109107/11transposon protein, putative, Mutator sub-class
LOC_Os01g218407/11transposon protein, putative, Mutator sub-class
LOC_Os11g442107/11transposon protein, putative, Mutator sub-class
LOC_Os10g363807/11transposon protein, putative, Mutator sub-class
LOC_Os11g474447/11Transposable element protein, putative, MuDR
LOC_Os04g316506/11transposon protein, putative, Mutator sub-class
LOC_Os02g293306/11transposon protein, putative, Mutator sub-class
LOC_Os03g282046/11transposon protein, putative, Mutator sub-class
LOC_Os12g262046/11transposon protein, putative, Mutator sub-class
LOC_Os07g296506/11transposon protein, putative, Mutator sub-class
LOC_Os10g307406/11transposon protein, putative, Mutator sub-class
LOC_Os06g095806/11Transposable element protein, putative, MuDR
LOC_Os08g411406/11hypothetical protein
LOC_Os12g395705/11Transposable element protein, putative, MuDR
LOC_Os03g608305/11hypothetical protein
LOC_Os01g142905/11hypothetical protein
LOC_Os11g442405/11Transposable element protein, putative, MuDR
LOC_Os01g743905/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g527405/11SWIM zinc finger family protein
LOC_Os02g462305/11transposon protein, putative, Mutator sub-class
LOC_Os02g520504/11transposon protein, putative, Mutator sub-class
LOC_Os03g556904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g156204/11transposon protein, putative, Mutator sub-class
LOC_Os12g317004/11transposon protein, putative, Mutator sub-class
LOC_Os01g499503/11transposon protein, putative, Mutator sub-class
LOC_Os08g366703/11hypothetical protein
LOC_Os12g046703/11transposon protein, putative, Mutator sub-class
LOC_Os08g255803/11Transposable element protein, putative, MuDR
LOC_Os02g184402/11SWIM zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45910OsAffx.12696.1.S1_at11/112+27971718..27973941tRNA-splicing endonuclease positive effector, putative
LOC_Os02g45920Os.17229.1.S1_at10/112+27979070..27983486expressed protein
LOC_Os02g45930Os.49582.1.S1_at11/112+27983621..27984706expressed protein
LOC_Os02g45940OsAffx.24745.1.S1_at11/112+27988208..27988861Histone H4, putative, expressed
LOC_Os02g45950OsAffx.12513.1.S1_at10/112+27989249..27992709expressed protein
LOC_Os02g45960Os.35344.18.S1_x_at11/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960Os.35344.3.S1_x_at9/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960OsAffx.22940.5.S1_x_at4/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960OsAffx.22940.5.S1_at3/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45969NANA2+28004107..28005249NA
LOC_Os02g45980Os.54682.1.S1_at10/112+28008953..28014651Regulator of chromosome condensation family protein, expressed
LOC_Os02g45990NANA2+28017283..28020211hypothetical protein
LOC_Os02g46000OsAffx.20387.1.S1_x_at1/112+28021498..28023975retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46010NANA2+28024633..28027046retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35344.18.S1_x_at--355--25138Chr12:24047788..24047812 (25 bp)
ATATCAGTGCCGATATCACCGCAGT
LOC_Os12g39150
Os.35344.18.S1_x_at--393--615145Chr12:24047830..24047854 (25 bp)
GAGGTTTGCACTTGACTGACGTTGA
LOC_Os12g39150
Os.35344.18.S1_x_at--982--279137Chr12:24047886..24047910 (25 bp)
AAGATGCGTGCGGTCATGCGCGTCT
LOC_Os12g39150
Os.35344.18.S1_x_at--571--871133Chr12:24047916..24047940 (25 bp)
TGTCGCAGCGCCGTGGACGTCGTAC
LOC_Os12g39150
Os.35344.18.S1_x_at--141--33936Chr10:22632511..22632733 (25 bp)
CAGCTGGACCTCGTATGCCTTCGAG
LOC_Os10g42600
Os.35344.18.S1_x_at--313--331137Chr12:24048394..24048478 (25 bp)
CACACGCAGGATTTGCAGCCGGGAT
LOC_Os12g39150
Os.35344.18.S1_x_at--603--715151Chr12:24048500..24048524 (25 bp)
GTCTCACGCCGGTAGGACTGGTCCT
LOC_Os12g39150
Os.35344.18.S1_x_at--869--811159Chr12:24048514..24048538 (25 bp)
GGACTGGTCCTACTAGCCAGTTCTA
LOC_Os12g39150
Os.35344.18.S1_x_at--1081--699162Chr12:24048573..24048597 (25 bp)
GTACTAGGCTCCTCTCAGCTTGGAG
LOC_Os12g39150
Os.35344.18.S1_x_at--503--97157Chr12:24048619..24048643 (25 bp)
AGGAGCAGCCAGAGGTCACACCTGT
LOC_Os12g39150
Os.35344.18.S1_x_at--507--969157Chr12:24048634..24048658 (25 bp)
TCACACCTGTACAGGCAGGACGGGT
LOC_Os12g39150
Target Sequence 
ATATCAGTGCCGATATCACCGCAGTCCAGGTGAGGTTGAGCAGAGGTTTGCACTTGACTGACGTTGAGCAGAGGTCGACC
TTCGACCGGATGCAGGAGAAGATGCGTGCGGTCATGCGCGTCTTCTCCTGTCGCAGCGCCGTGGACGTCGTACCTCCAGC
TGGACCTCGTATGCCTTCGAGCGCGTTCGCAGGCACGACCGGCGCTTCCGCGAGCTCCGCAGGGGCGTTCGCCACCTCTT
CGGGCGCGTTCGCCAGCTCTTCCTCTCACGGAGCGTCGATCCCTCACCCACACGCAGGATTTGCAGCCGGGATCTTCGGT
ACTGGGGCCTCTTCGTCTCACGCCGGTAGGACTGGTCCTACTAGCCAGTTCTACGACGACGACTTGCACGGTGCAGACCA
CCAGGACGTACTAGGCTCCTCTCAGCTTGGAGGAGCTCCAGAGGCGCACACTCAGGAGCAGCCAGAGGTCACACCTGTAC
AGGCAGGACGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35344.18.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis