Browse Element(s) Details


Os.35463.1.S1_at

Description gb:AK067414.1
DB_XREF= gi:32977432
TID=Os.35463.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35463 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013101C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013101C03, full insert sequence.
FL= gb:AK067414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4881011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48760NANA5+27860752..27864700expressed protein
LOC_Os05g48770OsAffx.15156.1.S1_at11/115+27867784..27870239expressed protein
LOC_Os05g48770OsAffx.27374.1.S1_x_at2/115+27867784..27870239expressed protein
LOC_Os05g48770Os.17546.4.S1_x_at1/115+27867784..27870239expressed protein
LOC_Os05g48780OsAffx.27373.1.S1_at4/115+27872837..27873259hypothetical protein
LOC_Os05g48780OsAffx.27373.1.S1_s_at4/115+27872837..27873259hypothetical protein
LOC_Os05g48790Os.17546.1.S2_a_at11/115+27875073..27878768expressed protein
LOC_Os05g48790Os.17546.4.S1_x_at10/115+27875073..27878768expressed protein
LOC_Os05g48790OsAffx.27374.1.S1_x_at9/115+27875073..27878768expressed protein
LOC_Os05g48800Os.11501.1.S1_at11/115+27884293..27887656fiber protein Fb2, putative, expressed
LOC_Os05g48810Os.35463.1.S1_at11/115+27889125..27891336DnaJ domain containing protein, expressed
LOC_Os05g48820Os.6086.2.S1_x_at10/115+27892394..27903100DDT domain containing protein, expressed
LOC_Os05g48830OsAffx.15157.1.S1_at11/115+27904880..27905338hypothetical protein
LOC_Os05g48840Os.27874.2.S1_x_at11/115+27906480..27907394expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35463.1.S1_at--1071--8931Chr05:27889625..27889649 (25 bp)
TGACGCAGAAGATACCGCTCGCCGA
LOC_Os05g48810
Os.35463.1.S1_at--520--371Chr05:27889527..27889551 (25 bp)
ATCAACCCGGGCTACGAGGAGGTCG
LOC_Os05g48810
Os.35463.1.S1_at--958--1071Chr05:27889460..27889484 (25 bp)
AGGGCAATCTCAGGGTCAAGTTCGA
LOC_Os05g48810
Os.35463.1.S1_at--669--2811Chr05:27889443..27889467 (25 bp)
AAGTTCGACATCAAGTTCCCGGCGA
LOC_Os05g48810
Os.35463.1.S1_at--339--6951Chr05:27889372..27889396 (25 bp)
GTAGATCGAGCAACTGCACCGATGT
LOC_Os05g48810
Os.35463.1.S1_at--457--5091Chr05:27889357..27889381 (25 bp)
GCACCGATGTAGTATCAAAGCCTTT
LOC_Os05g48810
Os.35463.1.S1_at--307--3291Chr05:27889342..27889366 (25 bp)
CAAAGCCTTTTCTTGTGTTGGTGGT
LOC_Os05g48810
Os.35463.1.S1_at--720--10751Chr05:27889316..27889340 (25 bp)
TTGAACTGGTGATCATCCGGCAGCC
LOC_Os05g48810
Os.35463.1.S1_at--130--1671Chr05:27889295..27889319 (25 bp)
AGCCGCGACGAATTTCTCGTTGAGA
LOC_Os05g48810
Os.35463.1.S1_at--19--3791Chr05:27889280..27889304 (25 bp)
CTCGTTGAGAGCTTTTTCAGGTCAT
LOC_Os05g48810
Os.35463.1.S1_at--160--5191Chr05:27889237..27889261 (25 bp)
GCAATGCGGCCTTAGATGTGTGAGA
LOC_Os05g48810
Target Sequence 
TGACGCAGAAGATACCGCTCGCCGAGGCCCTGACCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACG
ATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGGACCCCTC
CAAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCGGCGTCAAGC
GGCTGCTGGGGCAGTAGATCGAGCAACTGCACCGATGTAGTATCAAAGCCTTTTCTTGTGTTGGTGGTGTTGAACTGGTG
ATCATCCGGCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCT
TAGATGTGTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis