Browse Element(s) Details


Os.35704.1.S1_at

Description gb:AK066200.1
DB_XREF= gi:32976218
TID=Os.35704.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35704 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0031D02.26 (P0031D02.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055G05, full insert sequence.
FL= gb:AK066200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6093011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60890OsAffx.21772.1.S1_s_at11/111+35545907..35546374hypothetical protein
LOC_Os01g60900Os.12798.1.S1_at11/111+35551610..35553435expressed protein
LOC_Os01g60900OsAffx.11681.1.S1_at10/111+35551610..35553435expressed protein
LOC_Os01g60900Os.31147.2.S1_x_at1/111+35551610..35553435expressed protein
LOC_Os01g60910Os.32752.2.S1_s_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60910Os.32752.1.S1_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60920Os.50407.1.S1_at10/111+35564913..35567690F-box domain containing protein, expressed
LOC_Os01g60930Os.35704.1.S1_at11/111+35570772..35573426expressed protein
LOC_Os01g60940Os.35704.2.S1_at11/111+35574725..35575774expressed protein
LOC_Os01g60960Os.42531.1.S1_at11/111+35584410..35585972LOB domain protein 13, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35704.1.S1_at--862--4791Chr01:35573190..35573214 (25 bp)
GCTCGCCGCCAAGGTAATGGTTGAT
LOC_Os01g60930
Os.35704.1.S1_at--344--171Chr01:35573213..35573237 (25 bp)
ATTTTCTCGCCGTTCCTGGTAATGG
LOC_Os01g60930
Os.35704.1.S1_at--803--9771Chr01:35573232..35573256 (25 bp)
TAATGGCTGATTTTCTCGCCGTGCA
LOC_Os01g60930
Os.35704.1.S1_at--690--5111Chr01:35573254..35573278 (25 bp)
GCACTCACTAGCACTTGATGTCTTG
LOC_Os01g60930
Os.35704.1.S1_at--717--5111Chr01:35573264..35573288 (25 bp)
GCACTTGATGTCTTGATCACTTGTA
LOC_Os01g60930
Os.35704.1.S1_at--380--6451Chr01:35573278..35573302 (25 bp)
GATCACTTGTACAAATTCTTCGAAC
LOC_Os01g60930
Os.35704.1.S1_at--415--2171Chr01:35573290..35573314 (25 bp)
AAATTCTTCGAACACGATACGTGCA
LOC_Os01g60930
Os.35704.1.S1_at--973--6471Chr01:35573305..35573329 (25 bp)
GATACGTGCATACTCTGACACGCAC
LOC_Os01g60930
Os.35704.1.S1_at--1004--5631Chr01:35573321..35573345 (25 bp)
GACACGCACCATGTTGTTGTTGTAC
LOC_Os01g60930
Os.35704.1.S1_at--82--291Chr01:35573376..35573400 (25 bp)
ATAGTAGTGGACCTCTCTTGGACAC
LOC_Os01g60930
Os.35704.1.S1_at--16--2171Chr01:35573397..35573421 (25 bp)
ACACCCTGAAGAGCACATATTTTTT
LOC_Os01g60930
Target Sequence 
GCTCGCCGCCAAGGTAATGGTTGATTTTCTCGCCGTTCCTGGTAATGGCTGATTTTCTCGCCGTGCACTCACTAGCACTT
GATGTCTTGATCACTTGTACAAATTCTTCGAACACGATACGTGCATACTCTGACACGCACCATGTTGTTGTTGTACTTTA
CTGACTTTGTACAANGNCATGTACTTATAGTAGTGGACCTCTCTTGGACACCCTGAAGAGCACATATTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis