Browse Element(s) Details


Os.35704.2.S1_at

Description gb:AK061414.1
DB_XREF= gi:32971432
TID=Os.35704.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35704 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0031D02.26 (P0031D02.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D05, full insert sequence.
FL= gb:AK061414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6094011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60900Os.12798.1.S1_at11/111+35551610..35553435expressed protein
LOC_Os01g60900OsAffx.11681.1.S1_at10/111+35551610..35553435expressed protein
LOC_Os01g60900Os.31147.2.S1_x_at1/111+35551610..35553435expressed protein
LOC_Os01g60910Os.32752.2.S1_s_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60910Os.32752.1.S1_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60920Os.50407.1.S1_at10/111+35564913..35567690F-box domain containing protein, expressed
LOC_Os01g60930Os.35704.1.S1_at11/111+35570772..35573426expressed protein
LOC_Os01g60940Os.35704.2.S1_at11/111+35574725..35575774expressed protein
LOC_Os01g60960Os.42531.1.S1_at11/111+35584410..35585972LOB domain protein 13, putative, expressed
LOC_Os01g60970NANA1+35599507..35604567transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35704.2.S1_at--170--1831Chr01:35575210..35575234 (25 bp)
ACGCGGTACAGGTTCAAGCGGATCA
LOC_Os01g60940
Os.35704.2.S1_at--667--1011Chr01:35575310..35575334 (25 bp)
AGGTCTCGTCGTTGTCAAGCCGGTG
LOC_Os01g60940
Os.35704.2.S1_at--719--7251Chr01:35575451..35575475 (25 bp)
GTCCGAGCCTTTGGATGCTGCGATT
LOC_Os01g60940
Os.35704.2.S1_at--339--631Chr01:35575465..35575489 (25 bp)
ATGCTGCGATTTCGCGGATTCCGAA
LOC_Os01g60940
Os.35704.2.S1_at--705--6931Chr01:35575515..35575539 (25 bp)
GTAGGTCGCTCTCGACTTCTCGAGT
LOC_Os01g60940
Os.35704.2.S1_at--536--10591Chr01:35575531..35575555 (25 bp)
TTCTCGAGTGTATACGTGCGTCATC
LOC_Os01g60940
Os.35704.2.S1_at--771--10131Chr01:35575619..35575643 (25 bp)
TATGCATGCTGTTGTTGCCTAGCGT
LOC_Os01g60940
Os.35704.2.S1_at--323--8811Chr01:35575631..35575655 (25 bp)
TGTTGCCTAGCGTTTCATGGAAATC
LOC_Os01g60940
Os.35704.2.S1_at--957--8771Chr01:35575678..35575702 (25 bp)
TGTTTACGGATGAAACCCGACGTGT
LOC_Os01g60940
Os.35704.2.S1_at--1057--7391Chr01:35575699..35575723 (25 bp)
GTGTTCGGAACAGTTGATCATCTTT
LOC_Os01g60940
Os.35704.2.S1_at--897--6431Chr01:35575714..35575738 (25 bp)
GATCATCTTTTGTCACTAGTTTAAC
LOC_Os01g60940
Target Sequence 
ACGCGGTACAGGTTCAAGCGGATCAAGATCGGCTTCCTCGCCGGCATCTTCCGGAGGATCGCCCTCGGCCACGTGTGGCG
GCGGTCGGCGGCGTCGGTCCAGGTCTCGTCGTTGTCAAGCCGGTGGCTCTTCTCCTCGGCGGCCACGGCGCCGGAGAAGG
CCGAACACCTCGACCACGACACGCCCGCGCCACCGCCACCGCCAAGGCCGAACACCGAGCTGTCCACCCGGGCGCGCGCG
CGTCCGAGCCTTTGGATGCTGCGATTTCGCGGATTCCGAAGCTGGAGCCGCGACGACGGTTGGGCGTAGGTCGCTCTCGA
CTTCTCGAGTGTATACGTGCGTCATCATGGGGGATTAGAACGTGACAAATGAAATGTTTATGGTTGCGAGAGATGTTAAC
GGTTGTTTGTATGCATGCTGTTGTTGCCTAGCGTTTCATGGAAATCATCATTAATTACGCGTTGATTATGTTTACGGATG
AAACCCGACGTGTTCGGAACAGTTGATCATCTTTTGTCACTAGTTTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35704.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis