Browse Element(s) Details


Os.35800.1.S1_s_at

Description gb:AK065738.1
DB_XREF= gi:32975756
TID=Os.35800.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013040H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013040H05, full insert sequence.
FL= gb:AK065738.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0604011/11phox domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06010Os.31883.1.A1_at11/1111+2827513..2833603expressed protein
LOC_Os11g06020Os.11805.1.A1_s_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06020OsAffx.30836.1.S1_x_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06030OsAffx.7010.1.S1_at10/1111+2839740..2841509hypothetical protein
LOC_Os11g06040Os.35800.1.S1_s_at11/1111+2856728..2864854phox domain-containing protein, putative, expressed
LOC_Os11g06040Os.35800.1.S1_at8/1111+2856728..2864854phox domain-containing protein, putative, expressed
LOC_Os11g06050OsAffx.7012.1.S1_at11/1111+2868808..2871684hypothetical protein
LOC_Os11g06059NANA11+2872261..2872888NA

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Gene Ontology Classification
GO idTypeName
GO:0007242biological_processintracellular signaling cascade
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35800.1.S1_s_at--411--771Chr11:2857305..2857329 (25 bp)
ATGTCTGTGTGAAGCAGCTTGCTTA
LOC_Os11g06040
Os.35800.1.S1_s_at--315--10031Chr11:2857272..2857296 (25 bp)
TAGAGCAGGTGCTTGTGTCGCTCTT
LOC_Os11g06040
Os.35800.1.S1_s_at--674--10651Chr11:2857249..2857273 (25 bp)
TTCCCAGAGCTTCGTCAGCTAATAG
LOC_Os11g06040
Os.35800.1.S1_s_at--584--5511Chr11:2857166..2857190 (25 bp)
GAAAAGACGTCTTGATCCTTCAAAA
LOC_Os11g06040
Os.35800.1.S1_s_at--719--3291Chr11:2857128..2857152 (25 bp)
CAAATGGCCTTTGCTTGTTTCTTCT
LOC_Os11g06040
Os.35800.1.S1_s_at--497--2691Chr11:2857077..2857101 (25 bp)
AAGCTGCCTGGCACGCAAAAATTTT
LOC_Os11g06040
Os.35800.1.S1_s_at--19--9051Chr11:2857053..2857077 (25 bp)
TGCAGATGGATTTCAACAGCGTAAA
LOC_Os11g06040
Os.35800.1.S1_s_at--842--5391Chr11:2856969..2856993 (25 bp)
GAAGCTGTGTAAATTAGTCCTCTAA
LOC_Os11g06040
Os.35800.1.S1_s_at--848--9551Chr11:2856886..2856910 (25 bp)
TCTTTAATTCTTTTTCTCTCCTCAA
LOC_Os11g06040
Os.35800.1.S1_s_at--952--4291Chr11:2856867..2856891 (25 bp)
CCTCAATGTATTCTAGTCGTTCCTA
LOC_Os11g06040
Os.35800.1.S1_s_at--588--6571Chr11:2856808..2856832 (25 bp)
GTTCCAATTGTATAGGCGTACCGTA
LOC_Os11g06040
Target Sequence 
ATGTCTGTGTGAAGCAGCTTGCTTATGCAATGATAGAGCAGGTGCTTGTGTCGCTCTTCCCAGAGCTTCGTCAGCTAATA
GAGGACATACATGAGAAAGGTCGTAAGGAGCAAGNGTCATTCACTTACCAACTTTGACTGAAAAGACGTCTTGATCCTTC
AAAAACCNTGGTACTGCACAAATGGCCTTTGCTTGTTTCTTCTTTTACTCTGNCATTTTGCCCATGGCGAAGCTGCCTGG
CACGCAAAAATTTTGCAGATGGATTTCAACAGCGTAAAGTTGGATTGAGGANGCAGTTGTTGATTATCCNACCAAAACTA
TGTACAGATGTATATCAGAAGCTGTGTAAATTAGTCCTCTAATGCATACCAAGAACTACGTTCTTACNAGTGATCTCTGA
TAGTTTGATGTATCGTATCATTCTTTAATTCTTTTTCTCTCCTCAATGTATTCTAGTCGTTCCTAGCTNTCTTGGCTGAG
GTTTGTAAAAATATCGAATGTTCCAATTGTATAGGCGTACCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35800.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis