Browse Element(s) Details


Os.35901.1.S1_at

Description gb:AK065227.1
DB_XREF= gi:32975245
TID=Os.35901.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to SET1 (P0468B07.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002H03, full insert sequence.
FL= gb:AK065227.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5962010/11YDG/SRA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59580OsAffx.985.1.S1_x_at11/111+34785572..34792859Protein kinase domain containing protein
LOC_Os01g59589OsAffx.21659.1.S1_at2/111+34794308..34794507NA
LOC_Os01g59600Os.3706.1.S1_at11/111+34797869..34802345Proteasome subunit alpha type 3, putative, expressed
LOC_Os01g59610NANA1+34803170..34803795serine protease inhibitor, Kazal-type family protein, putative, expressed
LOC_Os01g59620Os.35901.1.S1_at10/111+34807419..34811830YDG/SRA domain containing protein, expressed
LOC_Os01g59630Os.23590.1.A1_at10/111+34812128..34816646Exostosin family protein, expressed
LOC_Os01g59640OsAffx.9467.1.S1_at11/111+34817654..34819545No apical meristem protein, expressed
LOC_Os01g59660Os.2698.3.S1_x_at11/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59660OsAffx.30142.1.S1_x_at1/111+34835213..34839625Transcription factor GAMYB, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0042054molecular_functionhistone methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35901.1.S1_at--1076--7871Chr01:34810191..34810215 (25 bp)
GGTTATCCACACATCATGTTCTTCG
LOC_Os01g59620
Os.35901.1.S1_at--160--5471Chr01:34810242..34810266 (25 bp)
GAACTGACTTATGACTATGGCGACA
LOC_Os01g59620
Os.35901.1.S1_at--81--5471Chr01:34810304..34810328 (25 bp)
GAACTGCCTTTGTGGATCCTCAAAT
LOC_Os01g59620
Os.35901.1.S1_at--795--191NONE
ATATTTACCTGATCCTTTTGCTTTT
NONE
Os.35901.1.S1_at--917--10511Chr01:34811541..34811565 (25 bp)
TTCAAATGGCTAACCTCGTTTGCCG
LOC_Os01g59620
Os.35901.1.S1_at--1023--3751Chr01:34811555..34811579 (25 bp)
CTCGTTTGCCGCTGTGGAAGTAGTA
LOC_Os01g59620
Os.35901.1.S1_at--539--211Chr01:34811598..34811622 (25 bp)
ATTTGCAATGCCCATTCTCGTGGTG
LOC_Os01g59620
Os.35901.1.S1_at--703--7451Chr01:34811620..34811644 (25 bp)
GTGTCTCTTGCGATGTGTGATTGTA
LOC_Os01g59620
Os.35901.1.S1_at--1130--771Chr01:34811695..34811719 (25 bp)
ATGTGATGCTGCTGATCTGACTACA
LOC_Os01g59620
Os.35901.1.S1_at--1068--8171Chr01:34811738..34811762 (25 bp)
GGCAAAGTTGGGACTGAACCCCTCG
LOC_Os01g59620
Os.35901.1.S1_at--286--4291Chr01:34811758..34811782 (25 bp)
CCTCGCGGTCAGCTGTGAATTCAGA
LOC_Os01g59620
Target Sequence 
GGTTATCCACACATCATGTTCTTCGCACTGAAGCATATTCCTCCCATGACAGAACTGACTTATGACTATGGCGACATCGG
ATGTGAATCTAGGGGTGTAGGTTCTAGAGCTAAGAACTGCCTTTGTGGATCCTCAAATTGCCGGGGCTTTTTTAGCTGAC
TGTTGAAGATGTGCATTATCTTATCAACATGCAAATATATTTACCTGATCCTTTTGCTTTTTTGGTGGTACTAGGAAGTG
GACTATGTTCAAGACTTTAGAAGTATGGAGAAGCTGGTTACTTCAAATGGCTAACCTCGTTTGCCGCTGTGGAAGTAGTA
ATAGTAAATTAGTGCAACATTTGCAATGCCCATTCTCGTGGTGTCTCTTGCGATGTGTGATTGTAGGCCTTGCAAGATCA
ATTTTGTAAAATTATGTGGGGGGGGTGGGGGGGGGATGTGATGCTGCTGATCTGACTACAGTCGATGATGTTTGGGTAGG
CAAAGTTGGGACTGAACCCCTCGCGGTCAGCTGTGAATTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis