Browse Element(s) Details


Os.36104.1.S1_at

Description gb:AK064485.1
DB_XREF= gi:32974503
TID=Os.36104.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-B07, full insert sequence.
FL= gb:AK064485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3103011/11glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30990NANA2+18504922..18508694retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g31000Os.56299.1.S1_at4/112+18509668..18512734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g31010Os.33661.2.S1_at2/112+18514373..18518146retrotransposon protein, putative, unclassified
LOC_Os02g31010OsAffx.11537.1.S1_at1/112+18514373..18518146retrotransposon protein, putative, unclassified
LOC_Os02g31010OsAffx.17040.2.S1_x_at1/112+18514373..18518146retrotransposon protein, putative, unclassified
LOC_Os02g31020OsAffx.2816.1.S1_at11/112+18521053..18524165hypothetical protein
LOC_Os02g31030Os.36104.1.S1_at11/112+18531301..18534920glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os02g31040OsAffx.24519.1.S1_at11/112+18540823..185463662-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase family protein, expressed
LOC_Os02g31050OsAffx.12302.1.S1_at10/112+18547487..18548899hypothetical protein
LOC_Os02g31060OsAffx.12303.1.S1_at11/112+18550615..18550854hypothetical protein
LOC_Os02g31070Os.9275.1.S1_x_at11/112+18558372..18562655expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36104.1.S1_at--829--2631Chr02:18534293..18534317 (25 bp)
AACCTCTCCCTACTGACTTATGGAA
LOC_Os02g31030
Os.36104.1.S1_at--1035--8111Chr02:18534314..18534428 (25 bp)
GGAACACTGAACAACGTACCGGAGG
LOC_Os02g31030
Os.36104.1.S1_at--678--1771Chr02:18534421..18534445 (25 bp)
ACCGGAGGCGGTGTACATGCAACAT
LOC_Os02g31030
Os.36104.1.S1_at--1138--2571Chr02:18534458..18534482 (25 bp)
AACGGTGTGATCGTCGACCTAGTGC
LOC_Os02g31030
Os.36104.1.S1_at--630--5871Chr02:18534524..18534548 (25 bp)
GAGCCTGACCTGAACGCCGATAATT
LOC_Os02g31030
Os.36104.1.S1_at--1046--1811Chr02:18534578..18534602 (25 bp)
ACGCCACATTTCTCGCAGTGTGAAA
LOC_Os02g31030
Os.36104.1.S1_at--139--3091Chr02:18534639..18534663 (25 bp)
AATAATCGATCCAGTTGCCTTGCTG
LOC_Os02g31030
Os.36104.1.S1_at--1104--1211Chr02:18534651..18534675 (25 bp)
AGTTGCCTTGCTGGTCTGCAGACTT
LOC_Os02g31030
Os.36104.1.S1_at--75--7171Chr02:18534664..18534688 (25 bp)
GTCTGCAGACTTTAGTGACTGATCT
LOC_Os02g31030
Os.36104.1.S1_at--777--5991Chr02:18534706..18534730 (25 bp)
GAGAGACCCCTTGTGGAGGGTTACA
LOC_Os02g31030
Os.36104.1.S1_at--1144--5691Chr02:18534886..18534910 (25 bp)
GACTGTAACGACGACCTATTTGGGT
LOC_Os02g31030
Target Sequence 
AACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGCGGTGTACATGCAACATCTGATGGGGGTGAACGG
TGTGATCGTCGACCTAGTGCAGGAGATCACCGAGGCCGTCTCTGAGCTCATCACCGTCCCGGAGCCTGACCTGAACGCCG
ATAATTTGAGCAATGGGGCAGCAAAAGACGCCGCNACGCCACATTTCTCGCAGTGTGAAATCTCATTCTTGCTGAGGCTC
ATNCCTGAGCTTGTGCAATAATCGATCCAGTTGCCTTGCTGGTCTGCAGACTTTAGTGACTGATCTGTATACAGGAAGAA
GAGGAGAGACCCCTTGTGGAGGGTTACAAGTTTACAAAACTTTTAAATAGGTTGATGTACTAGAGCTAAGCNCTGGTCCT
GTTTTTTAATTTNNNCTGGGGANGTTTGGATTCATGATGGATCATGGATGATGCATCCTGTAGCAAGGAGTTGAAACAGT
TGTTGTTACTGTTGTATCTGTAAGACTGTAACGACGACCTATTTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis