Browse Element(s) Details


Os.36215.1.S1_at

Description gb:AK064155.1
DB_XREF= gi:32974173
TID=Os.36215.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0445H04.21 (P0445H04.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F03, full insert sequence.
FL= gb:AK064155.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4713011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47090NANA1+27227653..27228492transposon protein, putative, unclassified
LOC_Os01g47100OsAffx.11496.1.S1_at11/111+27239445..272405183'-5' exonuclease family protein, expressed
LOC_Os01g47110NANA1+27243053..27243418expressed protein
LOC_Os01g47130Os.36215.1.S1_at11/111+27249865..27251334expressed protein
LOC_Os01g47140Os.45173.1.S1_x_at1/111+27271646..27273998retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47150NANA1+27274266..27278693retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36215.1.S1_at--1004--4991Chr01:27250405..27250429 (25 bp)
GCATGTTCCGGATCTTCGAGCTGAC
LOC_Os01g47130
Os.36215.1.S1_at--484--431Chr01:27250394..27250418 (25 bp)
ATCTTCGAGCTGACGTTCGGCGAGC
LOC_Os01g47130
Os.36215.1.S1_at--973--1591Chr01:27250286..27250310 (25 bp)
AGCTGCTCCAGGTCCGTCGATGTGG
LOC_Os01g47130
Os.36215.1.S1_at--977--7211Chr01:27250271..27250295 (25 bp)
GTCGATGTGGCGCAGTTCCCCATGC
LOC_Os01g47130
Os.36215.1.S1_at--846--1491Chr01:27250178..27250202 (25 bp)
AGCACGTACTGCAACGTCGACATGG
LOC_Os01g47130
Os.36215.1.S1_at--498--4231Chr01:27250104..27250128 (25 bp)
CCGTGAATTCACTGCAGACTGCTCG
LOC_Os01g47130
Os.36215.1.S1_at--193--4791Chr01:27250068..27250092 (25 bp)
GCTCGTCCCCTGATTATTCAGTGGG
LOC_Os01g47130
Os.36215.1.S1_at--1037--1091Chr01:27250049..27250073 (25 bp)
AGTGGGTATTCCAGCGTGTTACTGC
LOC_Os01g47130
Os.36215.1.S1_at--851--1971Chr01:27250029..27250053 (25 bp)
ACTGCCTGTCGTTTGGGATTTACTC
LOC_Os01g47130
Os.36215.1.S1_at--855--531Chr01:27249995..27250019 (25 bp)
ATCGCTGGCAGTTCTGTAGGGTTTC
LOC_Os01g47130
Os.36215.1.S1_at--495--5651Chr01:27249948..27249972 (25 bp)
GACATGTTGTAATCAGGGTTTCATT
LOC_Os01g47130
Target Sequence 
GCATGTTCCGGATCTTCGAGCTGACGTTCGGCGAGCCGGCGGAGCCCAGGCGCGCCGCCACCCCGTGCTGGTGGGTGGAG
ATCCCCGAGCTGACCGGCCGCGCGCTCTTCCTCGGCCGCAGCTGCTCCAGGTCCGTCGATGTGGCGCAGTTCCCCATGCT
CCAGGAGGACACCATCTACTTCCTCGACGACGCGAACCTCGACCTGTCCATGGTGCTCAACAACGGGAGCACGTACTGCA
ACGTCGACATGGGCATGTACAGGAAGGGCGAGAAGATCAGGCCTGGCGCTCGCNAATTCCCCCGTGAATTCACTGCAGAC
TGCTCGCCTCCGATCTGGCTCGTCCCCTGATTATTCAGTGGGTATTCCAGCGTGTTACTGCCTGTCGTTTGGGATTTACT
CCATTAATAAATCGCTGGCAGTTCTGTAGGGTTTCAGAAAAATGAAAAATGTATCTTGACATGTTGTAATCAGGGTTTCA
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis