Browse Element(s) Details


OsAffx.11496.1.S1_at

Description gb:NM_192476.1
DB_XREF= gi:34912035
GEN=P0684E06.27
TID=OsAffx.11496.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0684E06.27 (P0684E06.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4710011/113'-5' exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47080Os.41467.1.S1_at11/111+27215260..27222566Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os01g47080Os.6058.1.S1_at11/111+27215260..27222566Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os01g47090NANA1+27227653..27228492transposon protein, putative, unclassified
LOC_Os01g47100OsAffx.11496.1.S1_at11/111+27239445..272405183'-5' exonuclease family protein, expressed
LOC_Os01g47110NANA1+27243053..27243418expressed protein
LOC_Os01g47130Os.36215.1.S1_at11/111+27249865..27251334expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0005515molecular_functionprotein binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11496.1.S1_at--542--6231Chr01:27240020..27240044 (25 bp)
GATGGCGACACCATACCGATCCACA
LOC_Os01g47100
OsAffx.11496.1.S1_at--1004--4971Chr01:27239911..27239935 (25 bp)
GCATCGACACGGAGTGGCGCACTGA
LOC_Os01g47100
OsAffx.11496.1.S1_at--22--2511Chr01:27239868..27239892 (25 bp)
AACATGTTACAAGGTCGCGGTGCTC
LOC_Os01g47100
OsAffx.11496.1.S1_at--687--8791Chr01:27239815..27239839 (25 bp)
TGTTCCAGATCTACCAAGCCGGCAA
LOC_Os01g47100
OsAffx.11496.1.S1_at--265--2671Chr01:27239800..27239824 (25 bp)
AAGCCGGCAACATGGTCCCACATGA
LOC_Os01g47100
OsAffx.11496.1.S1_at--761--8591Chr01:27239788..27239812 (25 bp)
TGGTCCCACATGAGCTCGCGGAGTT
LOC_Os01g47100
OsAffx.11496.1.S1_at--835--4891Chr01:27239743..27239767 (25 bp)
GCTTCGTCGGCGTTGCAGTCAACAA
LOC_Os01g47100
OsAffx.11496.1.S1_at--885--5651Chr01:27239717..27239741 (25 bp)
GACATGCAACGTCTGGCCAATGATT
LOC_Os01g47100
OsAffx.11496.1.S1_at--512--6551Chr01:27239696..27239720 (25 bp)
GATTGCAACCTGAGGGTCGCCTGTG
LOC_Os01g47100
OsAffx.11496.1.S1_at--1057--4971Chr01:27239497..27239521 (25 bp)
GCATCGACGCATACGTGTCCTATGA
LOC_Os01g47100
OsAffx.11496.1.S1_at--64--8711Chr01:27239482..27239506 (25 bp)
TGTCCTATGAGATTGGCCGGCGGCT
LOC_Os01g47100
Target Sequence 
GATGGCGACACCATACCGATCCACACCACCATCACGTCGTCGCACTCCCTCGCTGCCCAATTTATCAACGAGATAGCCCG
CGAACGTCCCCAGGGGGGGCTCATCGTCGGCATCGACACGGAGTGGCGCACTGACCATCTGCCCAACGGCAAAACATGTT
ACAAGGTCGCGGTGCTCCAGCTCTGTGTCGGCCGCCGATGCCTCTTGTTCCAGATCTACCAAGCCGGCAACATGGTCCCA
CATGAGCTCGCGGAGTTCCTCGCCGACCCGAGCGTTCGCTTCGTCGGCGTTGCAGTCAACAACGACATGCAACGTCTGGC
CAATGATTGCAACCTGAGGGTCGCCTGTGCGGTGGATCTGAGATATGCTGCGGCGGCCGTGCTCGGTCAGCCGGAGCTTG
CGAGGGCGGGGCTGAAGAGACTGGCGCTCACGGTGATGGGCGCCCACATGGAGAAGGAGAAAAACATTACGAAGAGCAGA
TGGGGTGAGCCGACGCTGACGTGGGAGCAGGTCAACTACGCCTGCATCGACGCATACGTGTCCTATGAGATTGGCCGGCG
GCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis