Browse Element(s) Details


Os.41467.1.S1_at

Description gb:NM_192472.1
DB_XREF= gi:34912027
GEN=P0684E06.23
TID=Os.41467.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41467 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative pyruvate kinase (P0684E06.23), mRNA.
PROD=putative pyruvate kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4708011/11Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47040Os.29878.1.S1_at11/111+27188929..27190282C2 domain containing protein, expressed
LOC_Os01g47050Os.41468.1.S1_at11/111+27199065..27201881F-box family protein, putative, expressed
LOC_Os01g47060NANA1+27204457..27206125expressed protein
LOC_Os01g47070Os.171.1.S1_at11/111+27212345..27213567Acidic endochitinase precursor, putative, expressed
LOC_Os01g47080Os.41467.1.S1_at11/111+27215260..27222566Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os01g47080Os.6058.1.S1_at11/111+27215260..27222566Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os01g47090NANA1+27227653..27228492transposon protein, putative, unclassified
LOC_Os01g47100OsAffx.11496.1.S1_at11/111+27239445..272405183'-5' exonuclease family protein, expressed
LOC_Os01g47110NANA1+27243053..27243418expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0004743molecular_functionpyruvate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41467.1.S1_at--27--5571Chr01:27217600..27217624 (25 bp)
GAAAGCTGTTAAGGTCATGCATACT
LOC_Os01g47080
Os.41467.1.S1_at--788--9611Chr01:27217586..27217610 (25 bp)
TCATGCATACTGTTGCCCTGAGAAC
LOC_Os01g47080
Os.41467.1.S1_at--1133--6671Chr01:27217575..27217599 (25 bp)
GTTGCCCTGAGAACTGAAGCCACTA
LOC_Os01g47080
Os.41467.1.S1_at--204--1431Chr01:27217566..27217590 (25 bp)
AGAACTGAAGCCACTATGTCTGGTG
LOC_Os01g47080
Os.41467.1.S1_at--275--8151Chr01:27217540..27217564 (25 bp)
GGAAACACCGGCTAACCTTGGTCAG
LOC_Os01g47080
Os.41467.1.S1_at--850--3911Chr01:27217532..27217556 (25 bp)
CGGCTAACCTTGGTCAGGTGTTCAA
LOC_Os01g47080
Os.41467.1.S1_at--126--1051Chr01:27217437..27217541 (25 bp)
AGGTGTTCAAGAATCACATGAGTGA
LOC_Os01g47080
Os.41467.1.S1_at--82--751Chr01:27217411..27217435 (25 bp)
ATGTTTGCATACCATTCAACAATGA
LOC_Os01g47080
Os.41467.1.S1_at--59--9711Chr01:27217396..27217420 (25 bp)
TCAACAATGATGTCCAACACTCTTG
LOC_Os01g47080
Os.41467.1.S1_at--670--6251Chr01:27217388..27217412 (25 bp)
GATGTCCAACACTCTTGGAACATCA
LOC_Os01g47080
Os.41467.1.S1_at--855--8491Chr01:27217373..27217397 (25 bp)
TGGAACATCAATTGTGGTTTTCACC
LOC_Os01g47080
Target Sequence 
GAAAGCTGTTAAGGTCATGCATACTGTTGCCCTGAGAACTGAAGCCACTATGTCTGGTGGGGAAACACCGGCTAACCTTG
GTCAGGTGTTCAAGAATCACATGAGTGAAATGTTTGCATACCATTCAACAATGATGTCCAACACTCTTGGAACATCAATT
GTGGTTTTCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis