Browse Element(s) Details


Os.41468.1.S1_at

Description gb:AK121359.1
DB_XREF= gi:37990982
TID=Os.41468.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.41468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684E06.20 (P0684E06.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123E18, full insert sequence.
FL= gb:AK121359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4705011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47020NANA1+27177191..27180428transposon protein, putative, unclassified
LOC_Os01g47030NANA1+27181058..27187216transposon protein, putative, unclassified
LOC_Os01g47040Os.29878.1.S1_at11/111+27188929..27190282C2 domain containing protein, expressed
LOC_Os01g47050Os.41468.1.S1_at11/111+27199065..27201881F-box family protein, putative, expressed
LOC_Os01g47060NANA1+27204457..27206125expressed protein
LOC_Os01g47070Os.171.1.S1_at11/111+27212345..27213567Acidic endochitinase precursor, putative, expressed
LOC_Os01g47080Os.41467.1.S1_at11/111+27215260..27222566Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os01g47080Os.6058.1.S1_at11/111+27215260..27222566Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41468.1.S1_at--140--4371Chr01:27201571..27201595 (25 bp)
CCACATTCGTCCTGATGGATGCAAT
LOC_Os01g47050
Os.41468.1.S1_at--297--6251Chr01:27201584..27201608 (25 bp)
GATGGATGCAATTTCCTTTGCCTCT
LOC_Os01g47050
Os.41468.1.S1_at--905--3671Chr01:27201599..27201623 (25 bp)
CTTTGCCTCTTTTCATTGGATTAAT
LOC_Os01g47050
Os.41468.1.S1_at--103--451Chr01:27201626..27201650 (25 bp)
ATCTTTAGAATGTTGATCTCTCTCT
LOC_Os01g47050
Os.41468.1.S1_at--643--591Chr01:27201665..27201689 (25 bp)
ATGCCTGTTTACAAATGTACCTCTA
LOC_Os01g47050
Os.41468.1.S1_at--585--10571Chr01:27201742..27201766 (25 bp)
TTCTCAAGTTCAGCCATGTACTGCC
LOC_Os01g47050
Os.41468.1.S1_at--1118--8731Chr01:27201758..27201782 (25 bp)
TGTACTGCCTCGACAAAACCTGCAT
LOC_Os01g47050
Os.41468.1.S1_at--961--10271Chr01:27201791..27201815 (25 bp)
TTTGCTTGATGCAGGCCTTAGAACC
LOC_Os01g47050
Os.41468.1.S1_at--1003--871Chr01:27201803..27201827 (25 bp)
AGGCCTTAGAACCTGTCCATATAAA
LOC_Os01g47050
Os.41468.1.S1_at--332--2391Chr01:27201825..27201849 (25 bp)
AAACTGAATGAGCTATTGTCCTTAC
LOC_Os01g47050
Os.41468.1.S1_at--1004--5911Chr01:27201834..27201858 (25 bp)
GAGCTATTGTCCTTACAGCATGTCT
LOC_Os01g47050
Target Sequence 
CCACATTCGTCCTGATGGATGCAATTTCCTTTGCCTCTTTTCATTGGATTAATTAATCTTTAGAATGTTGATCTCTCTCT
CTCTCTCTATAATAATGCCTGTTTACAAATGTACCTCTATTTTCTTTAAAAACAATGCATAGATCTATGCTATTTATCAC
ATTTATCTGAATTCTCAAGTTCAGCCATGTACTGCCTCGACAAAACCTGCATACAATGTCTTTGCTTGATGCAGGCCTTA
GAACCTGTCCATATAAACTGAATGAGCTATTGTCCTTACAGCATGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis