Browse Element(s) Details


Os.6058.1.S1_at

Description gb:AK106457.1
DB_XREF= gi:32991666
TID=Os.6058.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-G01, full insert sequence.
FL= gb:AK106457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4708011/11Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47040Os.29878.1.S1_at11/111+27188929..27190282C2 domain containing protein, expressed
LOC_Os01g47050Os.41468.1.S1_at11/111+27199065..27201881F-box family protein, putative, expressed
LOC_Os01g47060NANA1+27204457..27206125expressed protein
LOC_Os01g47070Os.171.1.S1_at11/111+27212345..27213567Acidic endochitinase precursor, putative, expressed
LOC_Os01g47080Os.41467.1.S1_at11/111+27215260..27222566Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os01g47080Os.6058.1.S1_at11/111+27215260..27222566Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os01g47090NANA1+27227653..27228492transposon protein, putative, unclassified
LOC_Os01g47100OsAffx.11496.1.S1_at11/111+27239445..272405183'-5' exonuclease family protein, expressed
LOC_Os01g47110NANA1+27243053..27243418expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0004743molecular_functionpyruvate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6058.1.S1_at--809--5611Chr01:27216479..27216503 (25 bp)
GACAACGATTGGCTTTGTACCAAGG
LOC_Os01g47080
Os.6058.1.S1_at--195--1711Chr01:27216461..27216485 (25 bp)
ACCAAGGTGTATGTCCAGTCCAGAT
LOC_Os01g47080
Os.6058.1.S1_at--97--3871Chr01:27216419..27216443 (25 bp)
CTGAGAAGACATTTGGTGACGCTTT
LOC_Os01g47080
Os.6058.1.S1_at--1141--4171Chr01:27215615..27215639 (25 bp)
CCCATAATATTCAGGTCAGGAAGGT
LOC_Os01g47080
Os.6058.1.S1_at--934--10191Chr01:27215565..27215589 (25 bp)
TATTAACCCATGAATGAATTGACGG
LOC_Os01g47080
Os.6058.1.S1_at--790--2971Chr01:27215391..27215415 (25 bp)
AATGGTGTGAGCGATCGTTCCCAAT
LOC_Os01g47080
Os.6058.1.S1_at--729--4031Chr01:27215376..27215400 (25 bp)
CGTTCCCAATCCGTAGCATGAGTAT
LOC_Os01g47080
Os.6058.1.S1_at--693--4991Chr01:27215361..27215385 (25 bp)
GCATGAGTATCGCAGGGTTCTTTGA
LOC_Os01g47080
Os.6058.1.S1_at--952--6871Chr01:27215333..27215357 (25 bp)
GTATTACTGCCTATATGTTTCCTTG
LOC_Os01g47080
Os.6058.1.S1_at--607--9191Chr01:27215326..27215350 (25 bp)
TGCCTATATGTTTCCTTGTCAGAGA
LOC_Os01g47080
Os.6058.1.S1_at--948--10671Chr01:27215315..27215339 (25 bp)
TTCCTTGTCAGAGATTGTATGAACA
LOC_Os01g47080
Target Sequence 
GACAACGATTGGCTTTGTACCAAGGTGTATGTCCAGTCCAGATGGAATTTTCTGATGATGCTGAGAAGACATTTGGTGAC
GCTTTGTCATACTTGCTGAAACATGGTATGNTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGCAGGCAACCTAT
CTGGCGGTCGCAGTCCACCCATAATATTCAGGTCAGGAAGGTTTGATGTGAAGACTGCGGGCNACAGATATTAACCCATG
AATGAATTGACGGTNCTTCCAGCAAAACCTTAGGCCTGATGATAATACCACGCTGGCATTACTGGCATCATTTAACTGTG
AGCTTAGTGAGTTGTGTGCAAGACATGAGAGAGCCATTGTTGTGATTCTATATTCGTTGCTAAATATGTTACCTTGCATG
TAAAATGGTGTGAGCGATCGTTCCCAATCCGTAGCATGAGTATCGCAGGGTTCTTTGATTTGTATTACTGCCTATATGTT
TCCTTGTCAGAGATTGTATGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis