Browse Element(s) Details


Os.3663.1.S1_at

Description gb:AK068440.1
DB_XREF= gi:32978458
TID=Os.3663.1
CNT=43
FEA=FLmRNA
TIER=FL+Stack
STK=19
UG=Os.3663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155G19, full insert sequence.
FL= gb:AK065588.1 gb:AK068440.1 gb:AK061640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1880011/11CBL-interacting serine/threonine-protein kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18790NANA1+10594577..10595080hypothetical protein
LOC_Os01g18800Os.3663.1.S1_at11/111+10619601..10624330CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os01g18810OsAffx.23298.1.S1_at11/111+10625169..10627319hypothetical protein
LOC_Os01g18830OsAffx.10719.2.A1_at11/111+10638081..10639170hypothetical protein
LOC_Os01g18840OsAffx.11101.1.S1_at11/111+10640065..10641626expressed protein
LOC_Os01g18840OsAffx.11101.1.S1_s_at11/111+10640065..10641626expressed protein
LOC_Os01g18840OsAffx.11101.2.S1_at11/111+10640065..10641626expressed protein
LOC_Os01g18850Os.20756.1.S1_at11/111+10647062..10653535SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0009628biological_processresponse to abiotic stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009845biological_processseed germination
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3663.1.S1_at--146--8831Chr01:10623211..10623235 (25 bp)
TGATTGGAATGGCTTCTGCCCTTGA
LOC_Os01g18800
Os.3663.1.S1_at--335--8851Chr01:10623233..10623257 (25 bp)
TGATCTTTCAGGTTTCTTTGAGGAA
LOC_Os01g18800
Os.3663.1.S1_at--894--5431Chr01:10623664..10623684 (21 bp)
GAACCTCAGGAATCCATCATCCATT
LOC_Os01g18800
Os.3663.1.S1_at--547--571Chr01:10623684..10623705 (22 bp)
ATCCATTCTTGGTCTGTACTGAGGT
LOC_Os01g18800
Os.3663.1.S1_at--467--1971Chr01:10623796..10623816 (21 bp)
ACTGAGGTAGTCGAGCTCGGGCCAT
LOC_Os01g18800
Os.3663.1.S1_at--1007--9411Chr01:10623808..10623832 (25 bp)
TCGGGCCATCCTTATATGTTGTCGA
LOC_Os01g18800
Os.3663.1.S1_at--768--1351Chr01:10624079..10624103 (25 bp)
AGAGAGCTTCGACAGCGGATCTTCT
LOC_Os01g18800
Os.3663.1.S1_at--407--6431Chr01:10624096..10624120 (25 bp)
GATCTTCTCTGCCTGGTTTTTGAAG
LOC_Os01g18800
Os.3663.1.S1_at--228--4531Chr01:10624125..10624149 (25 bp)
GCCGCCCTGGATCATTTTGGTTAGA
LOC_Os01g18800
Os.3663.1.S1_at--215--631Chr01:10624161..10624185 (25 bp)
ATGCTCTGTTCTTCATACAAGCGTA
LOC_Os01g18800
Os.3663.1.S1_at--703--9011Chr01:10624220..10624244 (25 bp)
TGCAAGTTAGCCACCGATGTTTAAT
LOC_Os01g18800
Target Sequence 
TGATTGGAATGGCTTCTGCCCTTGATCTTTCAGGTTTCTTTGAGGAAGAGGATGCGTCTCAAAGAAAGATAAGGTTCACA
TCAACACATTCACCAAAAGATTTATTCGACAAGATTGAGAATGTTGTGACGGAGATGGGATTCCAAGTCCAGAGGGGTAA
TAGCAAGCTAAAGGTCATGAAAAATGGCAGGGGTTCAAAGAACCTCAGGAATCCATCATCCATTCTTGGTCTGTACTGAG
GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCATGGAGATCCTATATTGTATAGACAGCTATG
TGAGAGGCTATCAGATGAGCTAGGAGTGTGCAAGACAGAGCAGATTCAGAGGACGGAGTCGCTGGAGGATGATCTAGAGA
GCTTCGACAGCGGATCTTCTCTGCCTGGTTTTTGAAGAATTGCCGCCCTGGATCATTTTGGTTAGAGTTAGAGGAACATG
CTCTGTTCTTCATACAAGCGTAGGTTAGGATGTTGTATAGTGTACAAAGTGAGTGGTGCAAGTTAGCCACCGATGTTTAA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis