Browse Element(s) Details


Os.3706.1.S1_at

Description gb:AB026562.1
DB_XREF= gi:8671499
GEN=OsPAG1
TID=Os.3706.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.3706 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsPAG1 mRNA for alpha 7 subunit of 20S proteasome, complete cds.
PROD=alpha 7 subunit of 20S proteasome
FL= gb:AK103541.1 gb:AK061784.1 gb:AB026562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5960011/11Proteasome subunit alpha type 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59570Os.18744.1.S1_at11/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59570OsAffx.985.1.S1_x_at1/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59570Os.53116.1.S1_at1/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59580OsAffx.985.1.S1_x_at11/111+34785572..34792859Protein kinase domain containing protein
LOC_Os01g59589OsAffx.21659.1.S1_at2/111+34794308..34794507NA
LOC_Os01g59600Os.3706.1.S1_at11/111+34797869..34802345Proteasome subunit alpha type 3, putative, expressed
LOC_Os01g59610NANA1+34803170..34803795serine protease inhibitor, Kazal-type family protein, putative, expressed
LOC_Os01g59620Os.35901.1.S1_at10/111+34807419..34811830YDG/SRA domain containing protein, expressed
LOC_Os01g59630Os.23590.1.A1_at10/111+34812128..34816646Exostosin family protein, expressed
LOC_Os01g59640OsAffx.9467.1.S1_at11/111+34817654..34819545No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3706.1.S1_at--730--8491Chr01:34799360..34799384 (25 bp)
TGGCTAGCTACGTTCATCTTTGTAC
LOC_Os01g59600
Os.3706.1.S1_at--963--431Chr01:34799375..34799399 (25 bp)
ATCTTTGTACACTCTACTGGTGGCT
LOC_Os01g59600
Os.3706.1.S1_at--1113--9871Chr01:34799567..34799591 (25 bp)
TACATGATCGAACCCTCAGGAGTCT
LOC_Os01g59600
Os.3706.1.S1_at--671--2251Chr01:34799805..34799829 (25 bp)
AAATACTTTGGTGCTGCTCTGGGTA
LOC_Os01g59600
Os.3706.1.S1_at--1002--1231Chr01:34800649..34800673 (25 bp)
AGTTGAAGCTTTCCGAGCTTACCTG
LOC_Os01g59600
Os.3706.1.S1_at--556--2271Chr01:34801969..34801989 (21 bp)
AAATCGCCAGCATCAGAAGGTTCCT
LOC_Os01g59600
Os.3706.1.S1_at--438--1471Chr01:34802065..34802086 (22 bp)
AGAAGGTTCCTGCTGATCTTTTGGA
LOC_Os01g59600
Os.3706.1.S1_at--649--1311Chr01:34802138..34802162 (25 bp)
AGAGGAGACCCGACTATGTTCTACG
LOC_Os01g59600
Os.3706.1.S1_at--841--2031Chr01:34802150..34802174 (25 bp)
ACTATGTTCTACGTTTGGCCACTGA
LOC_Os01g59600
Os.3706.1.S1_at--269--10271Chr01:34802182..34802206 (25 bp)
TTTGATGTCATTACTGGCACACAGG
LOC_Os01g59600
Os.3706.1.S1_at--653--1071Chr01:34802204..34802228 (25 bp)
AGGGACATGGCCATTCTGTCGGATT
LOC_Os01g59600
Target Sequence 
TGGCTAGCTACGTTCATCTTTGTACACTCTACTGGTGGCTCAGGCCTTTTGGTTGTGGAGTTATTCTTGGAGGTTATGAT
AGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACAAATACTTTGGTGCTGCTCTGGGTAAAGGAAG
ACAGGCTGCAAAAACTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTGGAGGTTGCAAAGA
TCATTTATGGAGTACATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGC
CAGCATCAGAAGGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTGAGGAGATGGATGCTGA
TTAAGAGGAGACCCGACTATGTTCTACGTTTGGCCACTGATGAAATCTTTGATGTCATTACTGGCACACAGGGACATGGC
CATTCTGTCGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis