Browse Element(s) Details


Os.37227.1.S1_at

Description gb:AK059952.1
DB_XREF= gi:32969970
TID=Os.37227.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide (P0640E12.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B10, full insert sequence.
FL= gb:AK059952.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2942011/11RNA polymerase Rpb7, N-terminal domain containing protein, expressed
LOC_Os03g413001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29370OsAffx.22325.1.S1_at10/117+17247907..17248424hypothetical protein
LOC_Os07g29380OsAffx.31578.1.S1_at10/117+17250473..17252592hypothetical protein
LOC_Os07g29380OsAffx.31578.1.S1_x_at10/117+17250473..17252592hypothetical protein
LOC_Os07g29390OsAffx.10094.1.A1_x_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29390Os.20031.1.S1_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29390OsAffx.10094.1.A1_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29400NANA7+17263837..17264325hypothetical protein
LOC_Os07g29410Os.12100.1.S1_at11/117+17266971..17268414thioredoxin family protein, putative, expressed
LOC_Os07g29410Os.52278.1.S1_s_at11/117+17266971..17268414thioredoxin family protein, putative, expressed
LOC_Os07g29420Os.37227.1.S1_at11/117+17269209..17272584RNA polymerase Rpb7, N-terminal domain containing protein, expressed
LOC_Os07g29430OsAffx.16475.1.S1_at11/117+17273178..17273792hypothetical protein
LOC_Os07g29440NANA7+17274496..17274990S-adenosylmethionine synthetase 1, putative
LOC_Os07g29450Os.11483.1.S1_at11/117+17275926..17281914expressed protein
LOC_Os07g29450Os.11483.2.S1_at11/117+17275926..17281914expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37227.1.S1_at--819--10431Chr07:17271058..17271082 (25 bp)
TTAGGTTGCTGATGTTCAGGCCCTT
LOC_Os07g29420
Os.37227.1.S1_at--509--9091Chr07:17271052..17271076 (25 bp)
TGCTGATGTTCAGGCCCTTCGTTGG
LOC_Os07g29420
Os.37227.1.S1_at--129--9932Chr03:22921534..22921558 (25 bp)
TACGATTCTTGGTATCTAGCATAAA
LOC_Os03g41300
Os.37227.1.S1_at--56--9551Chr07:17269625..17269649 (25 bp)
TCTAGCATAAAATACCCGCCTATCC
LOC_Os07g29420
Os.37227.1.S1_at--479--4171Chr07:17269609..17269633 (25 bp)
CGCCTATCCCAGTCGAGCAAAAGGA
LOC_Os07g29420
Os.37227.1.S1_at--311--5651Chr07:17269580..17269604 (25 bp)
GACAGGGCATTTGCTCCAATGCAAA
LOC_Os07g29420
Os.37227.1.S1_at--38--951Chr07:17269383..17269407 (25 bp)
AGGAATAGTCCCAAGCTACTCCTTT
LOC_Os07g29420
Os.37227.1.S1_at--339--10051Chr07:17269355..17269379 (25 bp)
TAGTTTGCTGTTTTTGTGCAGTAAG
LOC_Os07g29420
Os.37227.1.S1_at--653--6532Chr03:22921823..22921843 (21 bp)
GATTTTTTAGCTAGAATGTCAGTAA
NONE
Os.37227.1.S1_at--219--2071Chr07:17269273..17269297 (25 bp)
ACTTGGTCATCTTCTGTTAGGAGCC
LOC_Os07g29420
Os.37227.1.S1_at--550--6751Chr07:17269258..17269282 (25 bp)
GTTAGGAGCCTGTTCCGTTGCTGTG
LOC_Os07g29420
Target Sequence 
TTAGGTTGCTGATGTTCAGGCCCTTCGTTGGGGAGGTTCTTGTCGGGAAGATCAGTGGATATGATGAAAAGGGTCTGCAT
GTTTCACTTGATTTCTTCAGTGATATAAGCATTCCCGGGCACTTGATGCAGTATGGCACGGCTAGGGCGCTAGATGGTAG
GTGGATGCTGAAGACTGAAGATGGTGATGAGCTNTATCTTGATTTAGATGATGAGATACGATTCTTGGTATCTAGCATAA
AATACCCGCCTATCCCAGTCGAGCAAAAGGAGNCTGACAGGGCATTTGCTCCAATGCAAATTATTGGAAGCATTAAAGGA
GACGGTCTTGGTCTTCTTGCTTGGTGGGCTGCAGATGAAGAGGAAGGAGAGGCCGAGNCCGAGGCAGAGGAATAGTCCCA
AGCTACTCCTTTCTNTAGTTTGCTGTTTTTGTGCAGTAAGAGATTTATAGGATTTTTTAGCTAGAATGTCAGTAATTTAT
ATTCTGTGGTATCNGCNACTTGGTCATCTTCTGTTAGGAGCCTGTTCCGTTGCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis