Browse Element(s) Details


Os.37718.1.S1_at

Description gb:AK120091.1
DB_XREF= gi:37989714
TID=Os.37718.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.37718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains similarity to aromatic rich glycoprotein (OSJNBa0049A03.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021F05, full insert sequence.
FL= gb:AK120091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2694011/11BURP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26910Os.48948.1.S1_at11/1110+13819013..13826258transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26910Os.48948.1.S1_x_at11/1110+13819013..13826258transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26910OsAffx.26155.1.S1_x_at5/1110+13819013..13826258transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26920OsAffx.22722.1.S1_x_at1/1110+13827358..13833264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g26930OsAffx.20354.1.S1_at11/1110+13833831..13836701retrotransposon protein, putative, unclassified
LOC_Os10g26940Os.37718.1.S1_at11/1110+13839897..13841440BURP domain containing protein, expressed
LOC_Os10g26950Os.46519.3.A1_at11/1110+13856100..13859737retrotransposon protein, putative, unclassified
LOC_Os10g26960Os.51841.1.S1_x_at1/1110+13864429..13866994Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004650molecular_functionpolygalacturonase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37718.1.S1_at--141--2691Chr10:13840767..13840791 (25 bp)
AAGCGGTGCGTCACATCAGCAGAGG
LOC_Os10g26940
Os.37718.1.S1_at--1010--3411Chr10:13840748..13840772 (25 bp)
CAGAGGACATGATCGACTTTGCCGT
LOC_Os10g26940
Os.37718.1.S1_at--1020--791Chr10:13840676..13840700 (25 bp)
ATGGGCCCGGCGAGTCGATCATGAT
LOC_Os10g26940
Os.37718.1.S1_at--87--9991Chr10:13840296..13840320 (25 bp)
TACCAGCTCGGTATCATGCCACGAA
LOC_Os10g26940
Os.37718.1.S1_at--996--10331Chr10:13840219..13840243 (25 bp)
TTTATGAGGCCGAGATCCTGTCCGT
LOC_Os10g26940
Os.37718.1.S1_at--939--7091Chr10:13840156..13840180 (25 bp)
GTCACATTGACACGTCTGCCTGGAA
LOC_Os10g26940
Os.37718.1.S1_at--303--8651Chr10:13840128..13840152 (25 bp)
TGGGCATCCTGCTTTTGTGGCACTA
LOC_Os10g26940
Os.37718.1.S1_at--1045--10471Chr10:13840063..13840087 (25 bp)
TTAATGGCTCTATGACCTGGGTCAT
LOC_Os10g26940
Os.37718.1.S1_at--492--7111Chr10:13840043..13840067 (25 bp)
GTCATCGCCGACAAATCCTAATTAC
LOC_Os10g26940
Os.37718.1.S1_at--1080--131Chr10:13840023..13840047 (25 bp)
ATTACACACACGTTTCGATCTGAAT
LOC_Os10g26940
Os.37718.1.S1_at--263--4631Chr10:13839923..13839947 (25 bp)
GCGATGTATCCGTGTGTTTTCAATA
LOC_Os10g26940
Target Sequence 
AAGCGGTGCGTCACATCAGCAGAGGACATGATCGACTTTGCCGTGGCGATGTTAGGTGATGACATTGTGGTTCGGAGTAC
CGTACTNGCCAAATGGGCCCGGCGAGTCGATCATGATTGGTAAGGTCAAGGGAATAAATGGTGGCAAGATTACCAGCTCG
GTATCATGCCACGAATACTTATTTCCATACATGGTATACTACTGCCACTCGGTGCCTAAAATCAGAGTTTATGAGGCCGA
GATCCTGTCCGTCCAGACGAAGGAGAAGATCAACAGCGGTGTCGCCATCTGTCACATTGACACGTCTGCCTGGAATGCTG
GGCATCCTGCTTTTGTGGCACTAGGTGGGAAGCCAGGTCAGAACAAGGTCTGCCACTGGATATTTAATGGCTCTATGACC
TGGGTCATCGCCGACAAATCCTAATTACACACACGTTTCGATCTGAATCGATGAACCATATATATATGCAGCATCAGACC
TATCTTAGTATATATTGCTGGTCTGCTACTGCACTTCTCCAGTGCGATGTATCCGTGTGTTTTCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis