Browse Element(s) Details


Os.37776.1.S1_at

Description gb:AK105905.1
DB_XREF= gi:32991114
TID=Os.37776.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0028G04.16 (P0028G04.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-G01, full insert sequence.
FL= gb:AK100118.1 gb:AK105905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2156011/11esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g215801/11esterase/lipase/thioesterase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21536Os.45173.1.S1_x_at3/111+12026271..12032467retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g21542OsAffx.22894.1.S1_at8/111+12035105..12035557retrotransposon protein, putative, unclassified
LOC_Os01g21550NANA1+12039758..12040204hypothetical protein
LOC_Os01g21560Os.37776.1.S1_at11/111+12050165..12051591esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g21570OsAffx.2051.1.S1_at8/111+12054836..12055227NA
LOC_Os01g21580Os.37776.1.S1_at1/111+12057202..12057519esterase/lipase/thioesterase family protein, putative
LOC_Os01g21590OsAffx.11145.1.S1_s_at11/111+12074114..12076082expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37776.1.S1_at--533--1792Chr01:12050846..12050870 (25 bp)
ACCGCTCCTTCAAGGTGCCGTGGAA
LOC_Os01g21560
Os.37776.1.S1_at--267--951Chr01:12051071..12051095 (25 bp)
AGGACAAGACGCTGCGGGTGTACCC
LOC_Os01g21560
Os.37776.1.S1_at--972--4592Chr01:12057416..12057440 (25 bp)
GCGAGCCCGAGGAGAACGTCGACAA
LOC_Os01g21580
Os.37776.1.S1_at--980--1511Chr01:12051215..12051239 (25 bp)
AGCAGTAGTTCGGTCGGTCACGCGT
LOC_Os01g21560
Os.37776.1.S1_at--162--9171Chr01:12051239..12051263 (25 bp)
TGCCGCGTGCTTGGGTAATTCATGG
LOC_Os01g21560
Os.37776.1.S1_at--399--9751Chr01:12051254..12051278 (25 bp)
TAATTCATGGCGGATTCAAAGCAAA
LOC_Os01g21560
Os.37776.1.S1_at--1137--10771Chr01:12051309..12051333 (25 bp)
TTGATTGGTGAGACGAGATCGATCT
LOC_Os01g21560
Os.37776.1.S1_at--1044--6032Chr01:12051323..12051347 (25 bp)
GAGATCGATCTGGTCCCGGTGTATC
LOC_Os01g21560
Os.37776.1.S1_at--234--7751Chr01:12051340..12051364 (25 bp)
GGTGTATCTCCGTCTCTGCGTGTGG
LOC_Os01g21560
Os.37776.1.S1_at--123--7171Chr01:12051351..12051375 (25 bp)
GTCTCTGCGTGTGGCCATGTTCCAT
LOC_Os01g21560
Os.37776.1.S1_at--195--3771Chr01:12051384..12051408 (25 bp)
CTCTCTGCTCGTATTAGTCCATGAA
LOC_Os01g21560
Target Sequence 
ACCGCTCCTTCAAGGTGCCGTGGAAGCGCGCCCTGGCGGTGGCGAGCCCGCGCCGCACCACGGCGCCGCCCCGCGCCGCC
ACGGCGCTGGAGCTCCTCCGCGTGTGCCGCGAGCTCCAGTCCCGGTTCGAGGAGGTGGAGCTCCCGCTCCTGGTCGTCCA
CGGCGGCGAGGACACCGTGTGCGACCCCGGGTGCGCGGAGGAGCTCCACCGCCGCGCCGGGAGCAAGGACAAGACGCTGC
GGGTGTACCCGGGGATGTGGCACCAGCTGGTCGGCGAGCCCGAGGAGAACGTCGACAAGGTGTTCGGCGACGTCCTCGAC
TGGCTCAAGTCCCACGCCGCCGCCGCTGCCGCCGCGCGTGGCGAGGGGCAGCAGTAGTTCGGTCGGTCACGCGTGCCGCG
TGCTTGGGTAATTCATGGCGGATTCAAAGCAAAAGTACGGGGGCGCAATAAAAGGTTGTGGAGTTGATTGGTGAGACGAG
ATCGATCTGGTCCCGGTGTATCTCCGTCTCTGCGTGTGGCCATGTTCCATCTCCGTGTCTCTCTGCTCGTATTAGTCCAT
GAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis