Browse Element(s) Details


OsAffx.11145.1.S1_s_at

Description tigr:9629.m02065
TID=OsAffx.11145.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2159011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21560Os.37776.1.S1_at11/111+12050165..12051591esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g21570OsAffx.2051.1.S1_at8/111+12054836..12055227NA
LOC_Os01g21580Os.37776.1.S1_at1/111+12057202..12057519esterase/lipase/thioesterase family protein, putative
LOC_Os01g21590OsAffx.11145.1.S1_s_at11/111+12074114..12076082expressed protein
LOC_Os01g21600NANA1+12081472..12084709retrotransposon protein, putative, unclassified
LOC_Os01g21610Os.32197.2.S1_x_at11/111+12091352..12093194Chaperone-activity of bc1 complex-like, mitochondrial precursor, putative, expressed
LOC_Os01g21620OsAffx.23327.1.S1_s_at11/111+12095465..12096325expressed protein
LOC_Os01g21620OsAffx.23327.2.S1_at10/111+12095465..12096325expressed protein
LOC_Os01g21630Os.15206.1.S1_at11/111+12099588..12105507Pectinesterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11145.1.S1_s_at--1040--9351Chr01:12075618..12075642 (25 bp)
TCGACTTCGACATCGCCGAGGCAAA
LOC_Os01g21590
OsAffx.11145.1.S1_s_at--773--8231Chr01:12075778..12075802 (25 bp)
GGCAACTTGCCATTCCTAGTAATCA
LOC_Os01g21590
OsAffx.11145.1.S1_s_at--908--10051Chr01:12075794..12075818 (25 bp)
TAGTAATCAGCTCCCCTTTTAAGAA
LOC_Os01g21590
OsAffx.11145.1.S1_s_at--944--6951Chr01:12075835..12075859 (25 bp)
GTAGCTGGAGTAGCATGCAACCGTG
LOC_Os01g21590
OsAffx.11145.1.S1_s_at--1046--8571Chr01:12075858..12075882 (25 bp)
TGGTAGTGCGGTCCTTAGATTTCCT
LOC_Os01g21590
OsAffx.11145.1.S1_s_at--1057--1251Chr01:12075874..12075898 (25 bp)
AGATTTCCTATTGGAGTACTCGTAT
LOC_Os01g21590
OsAffx.11145.1.S1_s_at--6--1191Chr01:12075888..12075912 (25 bp)
AGTACTCGTATTGGGTGTGCGTCTT
LOC_Os01g21590
OsAffx.11145.1.S1_s_at--54--9151Chr01:12075905..12075929 (25 bp)
TGCGTCTTGCGTTATCACTACATTA
LOC_Os01g21590
OsAffx.11145.1.S1_s_at--295--9791Chr01:12075945..12075969 (25 bp)
TAAGATCAGACTCGGTACATTTGGT
LOC_Os01g21590
OsAffx.11145.1.S1_s_at--1004--7011Chr01:12075959..12075983 (25 bp)
GTACATTTGGTTGGGCCTCGATCTC
LOC_Os01g21590
OsAffx.11145.1.S1_s_at--494--5051Chr01:12076004..12076028 (25 bp)
GCAGCAGTAGATTTGCCTTAGCTAG
LOC_Os01g21590
Target Sequence 
TCGACTTCGACATCGCCGAGGCAAACTCCTCCTCCGTCGACCACCTCACCTCGTCCGCCCCGCCGCCCCTCGCCGCGCTC
CAGCAGCAGCAGCAGCCGCTCGGCTCCAGCCCCTCCACCGCCGGCGGCCACCCCAACTAAAGGCAAGCGGCGGCGGCGGC
GGCAACTTGCCATTCCTAGTAATCAGCTCCCCTTTTAAGAAAAAAAAAGTTTTAGTAGTAGCTGGAGTAGCATGCAACCG
TGGTAGTGCGGTCCTTAGATTTCCTATTGGAGTACTCGTATTGGGTGTGCGTCTTGCGTTATCACTACATTATGCTATGG
TTTTGTGTAAGATCAGACTCGGTACATTTGGTTGGGCCTCGATCTCTTCTTTCATGAACAAGGGTAGCAGCAGTAGATTT
GCCTTAGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11145.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis