Browse Element(s) Details


OsAffx.23327.1.S1_s_at

Description gb:NM_183762.1
DB_XREF= gi:34894651
GEN=P0028G04.27
TID=OsAffx.23327.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0028G04.27 (P0028G04.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2162011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21590OsAffx.11145.1.S1_s_at11/111+12074114..12076082expressed protein
LOC_Os01g21600NANA1+12081472..12084709retrotransposon protein, putative, unclassified
LOC_Os01g21610Os.32197.2.S1_x_at11/111+12091352..12093194Chaperone-activity of bc1 complex-like, mitochondrial precursor, putative, expressed
LOC_Os01g21620OsAffx.23327.1.S1_s_at11/111+12095465..12096325expressed protein
LOC_Os01g21620OsAffx.23327.2.S1_at10/111+12095465..12096325expressed protein
LOC_Os01g21630Os.15206.1.S1_at11/111+12099588..12105507Pectinesterase, putative, expressed
LOC_Os01g21640OsAffx.11146.2.A1_at11/111+12108903..12109714expressed protein
LOC_Os01g21650Os.21817.1.S1_at11/111+12112075..12115679expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23327.1.S1_s_at--39--3591Chr01:12095502..12095526 (25 bp)
CATTTCTCTTGCTTCCACCATCGAG
LOC_Os01g21620
OsAffx.23327.1.S1_s_at--480--491Chr01:12095759..12095783 (25 bp)
ATCGGCTTCGGCTTAGGCTTCAGGT
LOC_Os01g21620
OsAffx.23327.1.S1_s_at--1089--3631Chr01:12095764..12095788 (25 bp)
CTTCGGCTTAGGCTTCAGGTGCAAC
LOC_Os01g21620
OsAffx.23327.1.S1_s_at--179--4911Chr01:12095775..12095799 (25 bp)
GCTTCAGGTGCAACATCACCGTCTG
LOC_Os01g21620
OsAffx.23327.1.S1_s_at--324--1051Chr01:12095780..12095804 (25 bp)
AGGTGCAACATCACCGTCTGGCGTG
LOC_Os01g21620
OsAffx.23327.1.S1_s_at--461--5151Chr01:12095784..12095808 (25 bp)
GCAACATCACCGTCTGGCGTGCACT
LOC_Os01g21620
OsAffx.23327.1.S1_s_at--325--9693Chr05:21618529..21618559 (25 bp)
TCACGGCGGCGTGGCCCATGGCCTT
NONE
OsAffx.23327.1.S1_s_at--869--6871Chr01:12096185..12096209 (25 bp)
GTATTTACGTCCGACGCGCGTCAAA
LOC_Os01g21620
OsAffx.23327.1.S1_s_at--325--7251Chr01:12096193..12096217 (25 bp)
GTCCGACGCGCGTCAAAAAAGGCCT
LOC_Os01g21620
OsAffx.23327.1.S1_s_at--446--4251Chr01:12096219..12096243 (25 bp)
CCGTGCGCCATGTCAGCATGGCAGA
LOC_Os01g21620
OsAffx.23327.1.S1_s_at--573--1531Chr01:12096233..12096257 (25 bp)
AGCATGGCAGATGGCGTGGTATCCA
LOC_Os01g21620
Target Sequence 
CATTTCTCTTGCTTCCACCATCGAGATCGGCTTCGGCTTAGGCTTCAGGTGCAACATCACCGTCTGGCGTGCACTCCGCG
ACGTGCCACCCGTGTACGCCTTCGTCACGGCGGCGTGGCCCATGGCCTTGCTCGGCGGCTCGTTCGCCGCCGGCGTCGCC
CGACGCTATCGCCGGGTATTTACGTCCGACGCGCGTCAAAAAAGGCCTCCCGTGCGCCATGTCAGCATGGCAGATGGCGT
GGTATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23327.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis