Browse Element(s) Details


Os.21817.1.S1_at

Description gb:CA756925
DB_XREF= gi:25800964
DB_XREF=OC13F11_T3.ab1
CLONE=OC13F11_T3.ab1
TID=Os.21817.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1153F04.19 (B1153F04.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2165011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21610Os.32197.2.S1_x_at11/111+12091352..12093194Chaperone-activity of bc1 complex-like, mitochondrial precursor, putative, expressed
LOC_Os01g21620OsAffx.23327.1.S1_s_at11/111+12095465..12096325expressed protein
LOC_Os01g21620OsAffx.23327.2.S1_at10/111+12095465..12096325expressed protein
LOC_Os01g21630Os.15206.1.S1_at11/111+12099588..12105507Pectinesterase, putative, expressed
LOC_Os01g21640OsAffx.11146.2.A1_at11/111+12108903..12109714expressed protein
LOC_Os01g21650Os.21817.1.S1_at11/111+12112075..12115679expressed protein
LOC_Os01g21660OsAffx.11147.1.S1_at10/111+12137166..12139111hypothetical protein
LOC_Os01g21660OsAffx.22887.1.S1_at5/111+12137166..12139111hypothetical protein
LOC_Os01g21670Os.34727.1.S1_at11/111+12139940..12144249expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21817.1.S1_at--1042--511Chr01:12112619..12112643 (25 bp)
ATCGAGGACTCCACCTGCATCAGGT
LOC_Os01g21650
Os.21817.1.S1_at--583--5711Chr01:12112613..12112637 (25 bp)
GACTCCACCTGCATCAGGTACATGA
LOC_Os01g21650
Os.21817.1.S1_at--52--4531Chr01:12112279..12112303 (25 bp)
GCCCGTGGGCGATTTTCGGTTTCTG
LOC_Os01g21650
Os.21817.1.S1_at--1126--151Chr01:12112268..12112292 (25 bp)
ATTTTCGGTTTCTGCTTGGCCACCA
LOC_Os01g21650
Os.21817.1.S1_at--989--2472Chr11:16295611..16295633 (22 bp)
AACACCATCGTCACCATATTGCAGA
NONE
Os.21817.1.S1_at--344--1731Chr01:12112208..12112232 (25 bp)
ACCATATTGCAGACGTTTTTCCATC
LOC_Os01g21650
Os.21817.1.S1_at--1083--5031Chr01:12112200..12112224 (25 bp)
GCAGACGTTTTTCCATCTCTTTAAA
LOC_Os01g21650
Os.21817.1.S1_at--576--8831Chr01:12112175..12112199 (25 bp)
TGATCATTAAATCCATCGATATATG
LOC_Os01g21650
Os.21817.1.S1_at--1030--5131Chr01:12112151..12112175 (25 bp)
GCAAACTGATCAATATCGTTCTATC
LOC_Os01g21650
Os.21817.1.S1_at--711--6731Chr01:12112134..12112158 (25 bp)
GTTCTATCAATTAATCTCTCTAGCT
LOC_Os01g21650
Os.21817.1.S1_at--1116--3052Chr03:27400347..27400851 (25 bp)
AATCTCTCTAGCTACATCCATATGT
NONE
Target Sequence 
ATCGAGGACTCCACCTGCATCAGGTACATGAACCTCGTCGCCTTCGAGCAGTGCCGCGGCGAGGCGGCGGTGGCGGAGAA
GCACCTGACCAGCTACGTGGTGCTCATGGACTACCTGATCAACACGGCGGAGGACGTGGTGATCCTGGACAGGGCGGACG
TGATGGAGAACAANCTGGCCAACGAGGAGGAGGCCGCCAAGTTCTTCAACCAGCTCCGCCTCAGCTCCTACATCAACTAC
GACGACCACTACCTGGCGCCGGTGTACCGCGACGTNGACGCCTTCTGCCGCCGCAAGTGGCCAAAATACAAGGCCAAATT
CCGCCGGGACTACCTCAACAGCCCGTGGGCGATTTTCGGTTTCTGCTTGGCCACCACATTCGCCGTCATCACCTTGTTCA
ACACCATCGTCACCATATTGCAGACGTTTTTCCATCTCTTTAAATGATCATTAAATCCATCGATATATGCAAACTGATCA
ATATCGTTCTATCAATTAATCTCTCTAGCTACATCCATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis