Browse Element(s) Details


Os.34727.1.S1_at

Description gb:AK070361.1
DB_XREF= gi:32980385
TID=Os.34727.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1153F04.22 (B1153F04.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048D19, full insert sequence.
FL= gb:AK070361.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2167011/11expressed protein
LOC_Os11g251101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21650Os.21817.1.S1_at11/111+12112075..12115679expressed protein
LOC_Os01g21660OsAffx.11147.1.S1_at10/111+12137166..12139111hypothetical protein
LOC_Os01g21660OsAffx.22887.1.S1_at5/111+12137166..12139111hypothetical protein
LOC_Os01g21670Os.34727.1.S1_at11/111+12139940..12144249expressed protein
LOC_Os01g21680OsAffx.9256.1.S1_at11/111+12146251..12146561hypothetical protein
LOC_Os01g21690Os.47004.1.S1_at1/111+12149214..12152896retrotransposon protein, putative, unclassified
LOC_Os01g21700OsAffx.23331.2.S1_x_at3/111+12158638..12159207hypothetical protein
LOC_Os01g21700OsAffx.23331.2.S1_at2/111+12158638..12159207hypothetical protein
LOC_Os01g21710OsAffx.22886.1.S1_at11/111+12167338..12169308hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34727.1.S1_at--582--4251Chr01:12140196..12140220 (25 bp)
CCGTGGGCGATCGTCGGCTTCTGCT
LOC_Os01g21670
Os.34727.1.S1_at--53--3271Chr01:12140140..12140164 (25 bp)
CAACACCATCGTCAACATACTCAAG
LOC_Os01g21670
Os.34727.1.S1_at--501--3551Chr01:12140125..12140149 (25 bp)
CATACTCAAGACGTTCTTCCATGTC
LOC_Os01g21670
Os.34727.1.S1_at--531--1891Chr01:12140115..12140139 (25 bp)
ACGTTCTTCCATGTCTTGCATTGAT
LOC_Os01g21670
Os.34727.1.S1_at--492--10672Chr11:13808169..13808570 (25 bp)
TTCCATGTCTTGCATTGATCATCCA
LOC_Os11g25110
Os.34727.1.S1_at--767--411Chr01:12140092..12140116 (25 bp)
ATCATCCAATGATCGATATGTGCAG
LOC_Os01g21670
Os.34727.1.S1_at--491--511Chr01:12140081..12140105 (25 bp)
ATCGATATGTGCAGTGCCTTGCTCA
LOC_Os01g21670
Os.34727.1.S1_at--677--9191Chr01:12140067..12140091 (25 bp)
TGCCTTGCTCACTGCAGAGAATTAT
LOC_Os01g21670
Os.34727.1.S1_at--250--5771Chr01:12139967..12139991 (25 bp)
GACGTTAATCATAGACATGTCTACA
LOC_Os01g21670
Os.34727.1.S1_at--333--2111Chr01:12139953..12139977 (25 bp)
ACATGTCTACATATTGCTTATTGGA
LOC_Os01g21670
Os.34727.1.S1_at--1115--3571Chr01:12139944..12139968 (25 bp)
CATATTGCTTATTGGAGACATCTTT
LOC_Os01g21670
Target Sequence 
CCGTGGGCGATCGTCGGCTTCTGCTTCGCCACCACCTTCGCCGTCGTCACCTTCTTCAACACCATCGTCAACATACTCAA
GACGTTCTTCCATGTCTTGCATTGATCATCCAATGATCGATATGTGCAGTGCCTTGCTCACTGCAGAGAATTATTATCTT
TGTTTTAAATCTATCTATCGATCTGTTCTTCTACCGCCATAAGTAAAAAAACATAAGACATGTATTGAAGACGTTAATCA
TAGACATGTCTACATATTGCTTATTGGAGACATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis