Browse Element(s) Details


OsAffx.9256.1.S1_at

Description tigr:9629.m02075
TID=OsAffx.9256.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2168011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21660OsAffx.11147.1.S1_at10/111+12137166..12139111hypothetical protein
LOC_Os01g21660OsAffx.22887.1.S1_at5/111+12137166..12139111hypothetical protein
LOC_Os01g21670Os.34727.1.S1_at11/111+12139940..12144249expressed protein
LOC_Os01g21680OsAffx.9256.1.S1_at11/111+12146251..12146561hypothetical protein
LOC_Os01g21690Os.47004.1.S1_at1/111+12149214..12152896retrotransposon protein, putative, unclassified
LOC_Os01g21700OsAffx.23331.2.S1_x_at3/111+12158638..12159207hypothetical protein
LOC_Os01g21700OsAffx.23331.2.S1_at2/111+12158638..12159207hypothetical protein
LOC_Os01g21710OsAffx.22886.1.S1_at11/111+12167338..12169308hypothetical protein
LOC_Os01g21720NANA1+12170431..12171824retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9256.1.S1_at--697--8531Chr01:12146503..12146527 (25 bp)
TGGACCTGGGACGAGCAGATCCAAC
LOC_Os01g21680
OsAffx.9256.1.S1_at--609--5831Chr01:12146501..12146525 (25 bp)
GACCTGGGACGAGCAGATCCAACAA
LOC_Os01g21680
OsAffx.9256.1.S1_at--491--1771Chr01:12146500..12146524 (25 bp)
ACCTGGGACGAGCAGATCCAACAAT
LOC_Os01g21680
OsAffx.9256.1.S1_at--398--8111Chr01:12146498..12146519 (22 bp)
GGACGAGCAGATCCAACAATGGGCT
LOC_Os01g21680
OsAffx.9256.1.S1_at--970--1511Chr01:12146350..12146514 (25 bp)
AGCAGATCCAACAATGGGCTCCAAC
LOC_Os01g21680
OsAffx.9256.1.S1_at--352--1291Chr01:12146347..12146511 (25 bp)
AGATCCAACAATGGGCTCCAACGAC
LOC_Os01g21680
OsAffx.9256.1.S1_at--654--2451Chr01:12146341..12146505 (25 bp)
AACAATGGGCTCCAACGACGGTGGT
LOC_Os01g21680
OsAffx.9256.1.S1_at--178--2231Chr01:12146340..12146409 (25 bp)
ACAATGGGCTCCAACGACGGTGGTG
LOC_Os01g21680
OsAffx.9256.1.S1_at--825--791Chr01:12146337..12146359 (23 bp)
ATGGGCTCCAACGACGGTGGTGGTG
LOC_Os01g21680
OsAffx.9256.1.S1_at--330--4031Chr01:12146308..12146332 (25 bp)
CGTAGGTTCCGCTGCCATCGGTGAA
LOC_Os01g21680
OsAffx.9256.1.S1_at--552--6931Chr01:12146307..12146331 (25 bp)
GTAGGTTCCGCTGCCATCGGTGAAG
LOC_Os01g21680
Target Sequence 
TGGACCTGGGACGAGCAGATCCAACAATGGGCTCCAACGACGGTGGTGGTGGGGGCGTAGGTTCCGCTGCCATCGGTGAA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis