Browse Element(s) Details


OsAffx.22887.1.S1_at

Description gb:NM_183767.1
DB_XREF= gi:34894661
GEN=B1153F04.21
TID=OsAffx.22887.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1153F04.21 (B1153F04.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g216605/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21650Os.21817.1.S1_at11/111+12112075..12115679expressed protein
LOC_Os01g21660OsAffx.11147.1.S1_at10/111+12137166..12139111hypothetical protein
LOC_Os01g21660OsAffx.22887.1.S1_at5/111+12137166..12139111hypothetical protein
LOC_Os01g21670Os.34727.1.S1_at11/111+12139940..12144249expressed protein
LOC_Os01g21680OsAffx.9256.1.S1_at11/111+12146251..12146561hypothetical protein
LOC_Os01g21690Os.47004.1.S1_at1/111+12149214..12152896retrotransposon protein, putative, unclassified
LOC_Os01g21700OsAffx.23331.2.S1_x_at3/111+12158638..12159207hypothetical protein
LOC_Os01g21700OsAffx.23331.2.S1_at2/111+12158638..12159207hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22887.1.S1_at--156--4231Chr01:12136211..12136235 (25 bp)
CCGAAAACGCTCCACTGCAGAAAGT
NONE
OsAffx.22887.1.S1_at--803--9071Chr01:12136242..12136266 (25 bp)
TGCTACCAAACAAACATCTCGGAGG
NONE
OsAffx.22887.1.S1_at--438--7991Chr01:12136262..12136286 (25 bp)
GGAGGGACCCCATCAGGATGAACAT
NONE
OsAffx.22887.1.S1_at--16--2111Chr01:12136283..12136568 (25 bp)
ACATGCGCTGGTGCTGGTTTTGGAA
NONE
OsAffx.22887.1.S1_at--51--10511Chr01:12136868..12136892 (25 bp)
TTCAACCGTAGGAAGCCTCCATGGT
NONE
OsAffx.22887.1.S1_at--205--8671NONE
TGTGGATGATGTACTATGCCATGGC
NONE
OsAffx.22887.1.S1_at--922--6171Chr01:12138545..12138569 (25 bp)
GAGGAGTGATGAATCGCTCTCTCAA
LOC_Os01g21660
OsAffx.22887.1.S1_at--287--3051Chr01:12138556..12138580 (25 bp)
AATCGCTCTCTCAAGACGGTGGTAG
LOC_Os01g21660
OsAffx.22887.1.S1_at--155--1932Chr01:12138571..12138595 (25 bp)
ACGGTGGTAGCATCATGGATACCCA
LOC_Os01g21660
OsAffx.22887.1.S1_at--281--2711Chr01:12138639..12138904 (25 bp)
AAGCAGACCAAAGTCCTCAAGGAGT
LOC_Os01g21660
OsAffx.22887.1.S1_at--1061--9611Chr01:12138904..12138928 (25 bp)
TTGGACGTTGGTGCGGACACTACCT
LOC_Os01g21660
Target Sequence 
CCGAAAACGCTCCACTGCAGAAAGTGGTTGATGCTACCAAACAAACATCTCGGAGGGACCCCATCAGGATGAACATGCGC
TGGTGCTGGTTTTGGAAAAAGAAGATCAGCGGTGGTGGTGCTACTGCCGGTGGCAGCAGCGGTGGAGGAGGCTCGCAGAC
GGTGGGTGGTCTCCACGGCGACGAGCGTTGGCAGCCTCCCTTCAACCGTAGGAAGCCTCCATGGTGGCGAGGATGCTTTG
GGGATGTTGATGGCTTGGGATATCTTCTCTGTGTTGATGCTTTGGGGATGTTGATGTGGATGATGTACTATGCCATGGCA
AGTGAGGACAAGTTCAACAACCTTTTGAGGCGGATCGAGGAGTTCGAGTGGACGCAGGTAGAGGTAGATAAGAGGAGTGA
TGAATCGCTCTCTCAAGACGGTGGTAGCATCATGGATACCCAAATCCAAAAGAATGCTAAAGACTTGCAAATTTCGGTTG
AGAAAAAGCAGACCAAAGTCCTCAAGGAGTTGGACGTTGGTGCGGACACTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis