Browse Element(s) Details


OsAffx.23331.2.S1_x_at

Description gb:NM_183769.1
DB_XREF= gi:34894665
GEN=B1153F04.24
TID=OsAffx.23331.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1153F04.24 (B1153F04.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g217808/11hypothetical protein
LOC_Os01g217003/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21730OsAffx.20313.1.S1_x_at4/111+12180719..12181485hypothetical protein
LOC_Os01g21740OsAffx.2052.1.S1_at11/111+12186014..12186478hypothetical protein
LOC_Os01g21750NANA1+12188028..12188369hypothetical protein
LOC_Os01g21760OsAffx.10689.1.S1_at11/111+12192066..12193294hypothetical protein
LOC_Os01g21760OsAffx.31174.4.S1_x_at1/111+12192066..12193294hypothetical protein
LOC_Os01g21770Os.51634.1.S1_at11/111+12196716..12197133expressed protein
LOC_Os01g21780OsAffx.23331.3.S1_s_at11/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_at9/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_x_at8/111+12202829..12206780hypothetical protein
LOC_Os01g21790NANA1+12207604..12208247hypothetical protein
LOC_Os01g21800NANA1+12213643..12214037hypothetical protein
LOC_Os01g21810OsAffx.23331.1.S1_s_at11/111+12215016..12217248hypothetical protein
LOC_Os01g21810Os.10381.1.S1_at1/111+12215016..12217248hypothetical protein
LOC_Os01g21820Os.27425.1.S1_at11/111+12217806..12230606Preprotein translocase secA subunit, chloroplast precursor, putative, expressed
LOC_Os01g21830OsAffx.11151.1.S1_at11/111+12231086..12231889hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23331.2.S1_x_at--378--1651Chr01:12158983..12159007 (25 bp)
AGCGACGGTTTGCTCGGACATCAAC
LOC_Os01g21700
OsAffx.23331.2.S1_x_at--299--8851Chr01:12159072..12159096 (25 bp)
TGATCATTGGAAGCTCAAGGCCAGA
LOC_Os01g21700
OsAffx.23331.2.S1_x_at--7--2231Chr01:12159104..12159128 (25 bp)
AAATTATTACGCGAGGAGACAGGGC
LOC_Os01g21700
OsAffx.23331.2.S1_x_at--514--392Chr01:12204276..12204335 (25 bp)
ATCAGACACGGCTGCCGGCGGCATC
LOC_Os01g21780
OsAffx.23331.2.S1_x_at--989--3932Chr01:12204329..12204353 (25 bp)
CGGCATCACCTCACGATGGCAGCAA
LOC_Os01g21780
OsAffx.23331.2.S1_x_at--669--9672Chr01:12204339..12204363 (25 bp)
TCACGATGGCAGCAACGGCTCGACG
LOC_Os01g21780
OsAffx.23331.2.S1_x_at--392--4552Chr01:12204422..12204446 (25 bp)
GCGCCGAGAAGGTAATTGGCACGCA
LOC_Os01g21780
OsAffx.23331.2.S1_x_at--151--9732Chr01:12204434..12204458 (25 bp)
TAATTGGCACGCAGGGACACGACGC
LOC_Os01g21780
OsAffx.23331.2.S1_x_at--53--8152Chr01:12204448..12204472 (25 bp)
GGACACGACGCAGGAGAGCAATCTT
LOC_Os01g21780
OsAffx.23331.2.S1_x_at--760--5012Chr01:12204457..12204481 (25 bp)
GCAGGAGAGCAATCTTCCCAGCATC
LOC_Os01g21780
OsAffx.23331.2.S1_x_at--379--6012Chr01:12204461..12204485 (25 bp)
GAGAGCAATCTTCCCAGCATCGGCA
LOC_Os01g21780
Target Sequence 
AGCGACGGTTTGCTCGGACATCAACGCCGCCGTGGAGATGCTGCTTCAGAGAATGAAAGAATTGGATTTCGTGGTGATTT
CAGAAGAGTTGATCATTGGAAGCTCAAGGCCAGAGATCATGAAATTATTACGCGAGGAGACAGGGCTGAGGCTACTCGNG
NTNAGGNNTNANGGAGGCAACGAGTACAGTTTCGTGCCCATCGTCAGGCGATCAGACACGGCTGCCGGCGGCATCACCTC
ACGATGGCAGCAACGGCTCGACGGCGGCGGCGATAGCCTCGTCGGTAAGAAGGACGACCAACGGGAGGAAACATCGACGG
CGCGCCGAGAAGGTAATTGGCACGCAGGGACACGACGCAGGAGAGCAATCTTCCCAGCATCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23331.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis