Browse Element(s) Details


OsAffx.10689.1.S1_at

Description gb:NM_183774.1
DB_XREF= gi:34894675
GEN=P0426D06.3
TID=OsAffx.10689.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0426D06.3 (P0426D06.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2176011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21710OsAffx.22886.1.S1_at11/111+12167338..12169308hypothetical protein
LOC_Os01g21720NANA1+12170431..12171824retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g21730OsAffx.20313.1.S1_x_at4/111+12180719..12181485hypothetical protein
LOC_Os01g21740OsAffx.2052.1.S1_at11/111+12186014..12186478hypothetical protein
LOC_Os01g21750NANA1+12188028..12188369hypothetical protein
LOC_Os01g21760OsAffx.10689.1.S1_at11/111+12192066..12193294hypothetical protein
LOC_Os01g21760OsAffx.31174.4.S1_x_at1/111+12192066..12193294hypothetical protein
LOC_Os01g21770Os.51634.1.S1_at11/111+12196716..12197133expressed protein
LOC_Os01g21780OsAffx.23331.3.S1_s_at11/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_at9/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_x_at8/111+12202829..12206780hypothetical protein
LOC_Os01g21790NANA1+12207604..12208247hypothetical protein
LOC_Os01g21800NANA1+12213643..12214037hypothetical protein
LOC_Os01g21810OsAffx.23331.1.S1_s_at11/111+12215016..12217248hypothetical protein
LOC_Os01g21810Os.10381.1.S1_at1/111+12215016..12217248hypothetical protein
LOC_Os01g21820Os.27425.1.S1_at11/111+12217806..12230606Preprotein translocase secA subunit, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10689.1.S1_at--799--5511Chr01:12192105..12192129 (25 bp)
GAAAACCGAGGTGCGTCTTCAGTGG
LOC_Os01g21760
OsAffx.10689.1.S1_at--89--1051Chr01:12192113..12192137 (25 bp)
AGGTGCGTCTTCAGTGGCTGTGCCT
LOC_Os01g21760
OsAffx.10689.1.S1_at--1070--10531Chr01:12192122..12192146 (25 bp)
TTCAGTGGCTGTGCCTGTGCAGACG
LOC_Os01g21760
OsAffx.10689.1.S1_at--255--9051Chr01:12192190..12192214 (25 bp)
TGCAGGAGTTCGTCGTCCCAGCGCT
LOC_Os01g21760
OsAffx.10689.1.S1_at--655--10611Chr01:12192198..12192222 (25 bp)
TTCGTCGTCCCAGCGCTGTAAGAGA
LOC_Os01g21760
OsAffx.10689.1.S1_at--147--7251Chr01:12192204..12192228 (25 bp)
GTCCCAGCGCTGTAAGAGAGGCATT
LOC_Os01g21760
OsAffx.10689.1.S1_at--924--1311Chr01:12192220..12192244 (25 bp)
AGAGGCATTTGACACTGCCGGCCAG
LOC_Os01g21760
OsAffx.10689.1.S1_at--33--4491Chr01:12192236..12192260 (25 bp)
GCCGGCCAGTGGCTACTCAAAAGAA
LOC_Os01g21760
OsAffx.10689.1.S1_at--1128--7531Chr01:12192244..12192268 (25 bp)
GTGGCTACTCAAAAGAATCCGAGGA
LOC_Os01g21760
OsAffx.10689.1.S1_at--195--2431Chr01:12192275..12192299 (25 bp)
AAAACGACGTGGAGACGCTTTGCTC
LOC_Os01g21760
OsAffx.10689.1.S1_at--547--5991Chr01:12192286..12192310 (25 bp)
GAGACGCTTTGCTCCGCGCAAGGGC
LOC_Os01g21760
Target Sequence 
GAAAACCGAGGTGCGTCTTCAGTGGCTGTGCCTGTGCAGACGAAGAAGCTGTGGCTGTGCCTGTGCAGGCAGGTCCAGGC
CGCACTGCAGGAGTTCGTCGTCCCAGCGCTGTAAGAGAGGCATTTGACACTGCCGGCCAGTGGCTACTCAAAAGAATCCG
AGGAATCGTAAAAACGACGTGGAGACGCTTTGCTCCGCGCAAGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis