Browse Element(s) Details


Os.27425.1.S1_at

Description gb:CB620696
DB_XREF= gi:29615684
DB_XREF=OSIIEa06B08.r
CLONE=OSIIEa06B08
TID=Os.27425.1
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=3
UG=Os.27425 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative SecA-type chloroplast protein transport factor (P0426D06.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2182011/11Preprotein translocase secA subunit, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21760OsAffx.10689.1.S1_at11/111+12192066..12193294hypothetical protein
LOC_Os01g21760OsAffx.31174.4.S1_x_at1/111+12192066..12193294hypothetical protein
LOC_Os01g21770Os.51634.1.S1_at11/111+12196716..12197133expressed protein
LOC_Os01g21780OsAffx.23331.3.S1_s_at11/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_at9/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_x_at8/111+12202829..12206780hypothetical protein
LOC_Os01g21790NANA1+12207604..12208247hypothetical protein
LOC_Os01g21800NANA1+12213643..12214037hypothetical protein
LOC_Os01g21810OsAffx.23331.1.S1_s_at11/111+12215016..12217248hypothetical protein
LOC_Os01g21810Os.10381.1.S1_at1/111+12215016..12217248hypothetical protein
LOC_Os01g21820Os.27425.1.S1_at11/111+12217806..12230606Preprotein translocase secA subunit, chloroplast precursor, putative, expressed
LOC_Os01g21830OsAffx.11151.1.S1_at11/111+12231086..12231889hypothetical protein
LOC_Os01g21840Os.35344.18.S1_x_at7/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840OsAffx.22940.5.S1_at7/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840Os.35344.3.S1_x_at6/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840OsAffx.22940.5.S1_x_at3/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21850Os.34696.2.S1_x_at11/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.1.S1_x_at11/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.2.S1_at10/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.1.S1_at9/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21860Os.1107.2.S1_s_at11/111+12247392..12251519expressed protein
LOC_Os01g21860Os.1107.1.S1_at11/111+12247392..12251519expressed protein
LOC_Os01g21860Os.48883.1.S1_at11/111+12247392..12251519expressed protein
LOC_Os01g21870NANA1+12252518..12252883expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006605biological_processprotein targeting
GO:0006886biological_processintracellular protein transport
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27425.1.S1_at--1013--6011Chr01:12218803..12218827 (25 bp)
GAGAGGTTCCTTATTCTAAGCAACA
LOC_Os01g21820
Os.27425.1.S1_at--5--273Chr01:12175327..12175351 (25 bp)
ATAGGCTCTGGAAGGAACACTTGCA
NONE
Os.27425.1.S1_at--192--4151Chr01:12218708..12218732 (25 bp)
CGCCCAACGAGATCCTCTTATTGAA
LOC_Os01g21820
Os.27425.1.S1_at--864--10111Chr01:12218651..12218675 (25 bp)
TATGATGGCTCAAATTCGACGGAAT
LOC_Os01g21820
Os.27425.1.S1_at--228--9911Chr01:12218204..12218644 (25 bp)
TACTCTGTTTATCAGTTCAAGCCAG
LOC_Os01g21820
Os.27425.1.S1_at--492--2691Chr01:12218092..12218116 (25 bp)
AAGCTGCATCTTGAGTGTGGTCACT
LOC_Os01g21820
Os.27425.1.S1_at--253--251Chr01:12218051..12218075 (25 bp)
ATATCTCCATGTTGGTGGTCGTCGT
LOC_Os01g21820
Os.27425.1.S1_at--997--9271Chr01:12218027..12218051 (25 bp)
TCCCCAGCCCTATAATTAAGCCTAT
LOC_Os01g21820
Os.27425.1.S1_at--696--8951Chr01:12217910..12217934 (25 bp)
TGACATGTCGACCAATCAGCTACGC
LOC_Os01g21820
Os.27425.1.S1_at--138--611Chr01:12217883..12217907 (25 bp)
ATGCCCTGGCATATTGTTCATAGTA
LOC_Os01g21820
Os.27425.1.S1_at--838--10091Chr01:12217860..12217884 (25 bp)
TAGGCGACACCAGTCTTACAATTGT
LOC_Os01g21820
Target Sequence 
GAGAGGTTCCTTATTCTAAGCAACATTGATAGGCTCTGGAAGGAACACTTGCAGGCATTGAAGTTTGTGCAACAGGCTGT
TGGTTTGAGGGGTTACGCCCAACGAGATCCTCTTATTGAATATAAACTGGAGGGATATAATCTTTTCTTGGATATGATGG
CTCAAATTCGACGGAATGTAATTTACTCTGTTTATCAGTTCAAGCCAGTGATGAAGAACCAAGAAGAGGAGAAATCTGAA
AAGAAGGGGACAAAGAAGAAAGTCGACAAGGGTGCTAACAAACTTGGTGCTGCCCAAGCTGCATCTTGAGTGTGGTCACT
AAAATTTTGTCGTTATATATCTCCATGTTGGTGGTCGTCGTCCCCAGCCCTATAATTAAGCCTATAGGGATGTTTGTCAG
AGTAGAGAGCAGTACAAGTAATGAGATAATTCAGTGCCTTGATGCTGGAATACAGTTTCTTAATGTAAATGTTTCTTTGA
CATGTCGACCAATCAGCTACGCCCATGCCCTGGCATATTGTTCATAGTAGGCGACACCAGTCTTACAATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis