Browse Element(s) Details


Os.1107.2.S1_s_at

Description gb:CR279892
DB_XREF= gi:44666458
DB_XREF=CR279892
CLONE=p448g08p3
TID=Os.1107.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0426D06.11 (P0426D06.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2186011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21820Os.27425.1.S1_at11/111+12217806..12230606Preprotein translocase secA subunit, chloroplast precursor, putative, expressed
LOC_Os01g21830OsAffx.11151.1.S1_at11/111+12231086..12231889hypothetical protein
LOC_Os01g21840Os.35344.18.S1_x_at7/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840OsAffx.22940.5.S1_at7/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840Os.35344.3.S1_x_at6/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840OsAffx.22940.5.S1_x_at3/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21850Os.34696.2.S1_x_at11/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.1.S1_x_at11/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.2.S1_at10/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.1.S1_at9/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21860Os.1107.2.S1_s_at11/111+12247392..12251519expressed protein
LOC_Os01g21860Os.1107.1.S1_at11/111+12247392..12251519expressed protein
LOC_Os01g21860Os.48883.1.S1_at11/111+12247392..12251519expressed protein
LOC_Os01g21870NANA1+12252518..12252883expressed protein
LOC_Os01g21880NANA1+12262627..12263007expressed protein
LOC_Os01g21890OsAffx.2054.2.S1_at11/111+12265391..12273250NA
LOC_Os01g21890OsAffx.2054.2.S1_x_at11/111+12265391..12273250NA
LOC_Os01g21890OsAffx.23347.2.S1_x_at5/111+12265391..12273250NA
LOC_Os01g21890OsAffx.23347.2.S1_at4/111+12265391..12273250NA
LOC_Os01g21900NANA1+12274415..12274876Soluble inorganic pyrophosphatase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1107.2.S1_s_at--975--8991Chr01:12250882..12250906 (25 bp)
TGAAGAGGCTCCTACAGTCTCGAGA
LOC_Os01g21860
Os.1107.2.S1_s_at--494--9371Chr01:12250901..12251084 (25 bp)
TCGAGACCAGAGGAGAGCAAGCCTA
LOC_Os01g21860
Os.1107.2.S1_s_at--914--4391Chr01:12251097..12251121 (25 bp)
GCCAACCTGCACTCCTGAAAAATGT
LOC_Os01g21860
Os.1107.2.S1_s_at--422--331Chr01:12251123..12251147 (25 bp)
ATAATTTCGGTGAAACCACAAGCGA
LOC_Os01g21860
Os.1107.2.S1_s_at--182--6471Chr01:12251171..12251195 (25 bp)
GATAAGCCTCCTGCGAAGGAGCTTC
LOC_Os01g21860
Os.1107.2.S1_s_at--752--2911Chr01:12251186..12251210 (25 bp)
AAGGAGCTTCCTTCAAATGGGCACA
LOC_Os01g21860
Os.1107.2.S1_s_at--14--811Chr01:12251202..12251226 (25 bp)
ATGGGCACAGTGCAGATCACAAGCC
LOC_Os01g21860
Os.1107.2.S1_s_at--822--1271Chr01:12251230..12251254 (25 bp)
AGATGCCACCAAGGGCGTGCTTGGT
LOC_Os01g21860
Os.1107.2.S1_s_at--959--4931Chr01:12251248..12251272 (25 bp)
GCTTGGTTCTCTGGTGCAGTATGAT
LOC_Os01g21860
Os.1107.2.S1_s_at--832--8091Chr01:12251293..12251317 (25 bp)
GGACGTATGACAACTGTAACAGAGC
LOC_Os01g21860
Os.1107.2.S1_s_at--829--4711Chr01:12251334..12251358 (25 bp)
GCTGGCTGGTGTCTGGCAAAAATAT
LOC_Os01g21860
Target Sequence 
TGAAGAGGCTCCTACAGTCTCGAGACCAGAGGAGAGCAAGCCTAAGGCAAAAAGGAGCCAACCTGCACTCCTGAAAAATG
TAATAATTTCGGTGAAACCACAAGCGAAGAAAGCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCA
AATGGGCACAGTGCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGATGATGATGA
AAGCAGTGATGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGTTTTGCTGGCTGGTGTCTGGCAAAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1107.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis